Variant report

Variant	rs6780812
Chromosome Location	chr3:68386208-68386209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17047573	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17047699	0.88[YRI][hapmap]
rs17047716	1.00[MEX][hapmap];0.88[YRI][hapmap]
rs262207	0.88[YRI][hapmap]
rs262209	0.88[YRI][hapmap]
rs56300927	1.00[AMR][1000 genomes]
rs6777840	0.81[LWK][hapmap]
rs6778918	1.00[CEU][hapmap]
rs6783583	1.00[MEX][hapmap];0.88[YRI][hapmap]
rs6797678	0.88[YRI][hapmap]
rs6798891	1.00[CEU][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6801600	1.00[AMR][1000 genomes]
rs73836901	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73837610	1.00[AMR][1000 genomes]
rs73838717	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838718	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73838720	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7629385	1.00[CEU][hapmap]
rs7640148	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010992	chr3:68353191-68388825	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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