Variant report

Variant	rs6781507
Chromosome Location	chr3:113204026-113204027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13326562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13327031	1.00[EUR][1000 genomes]
rs13353449	1.00[EUR][1000 genomes]
rs2399487	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28539944	0.81[EUR][1000 genomes]
rs28614095	0.81[EUR][1000 genomes]
rs4419353	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6438154	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6763234	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779241	1.00[EUR][1000 genomes]
rs6780720	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6797630	0.81[EUR][1000 genomes]
rs6808103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950895	0.81[EUR][1000 genomes]
rs7612448	0.91[EUR][1000 genomes]
rs7618195	0.86[EUR][1000 genomes]
rs7625829	0.95[EUR][1000 genomes]
rs7629636	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810059	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810754	0.81[EUR][1000 genomes]
rs9811168	0.90[EUR][1000 genomes]
rs9827490	0.81[EUR][1000 genomes]
rs9827772	0.86[EUR][1000 genomes]
rs9836199	0.90[EUR][1000 genomes]
rs9846529	0.81[EUR][1000 genomes]
rs9851183	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9851407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9852068	1.00[EUR][1000 genomes]
rs9860473	0.95[EUR][1000 genomes]
rs9863114	0.90[EUR][1000 genomes]
rs9878186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113160800-113224800	Weak transcription	Placenta	Placenta
2	chr3:113160800-113232600	Weak transcription	Right Ventricle	heart
3	chr3:113172800-113232800	Weak transcription	HSMMtube	muscle
4	chr3:113176400-113233200	Weak transcription	Gastric	stomach
5	chr3:113177400-113225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:113177600-113224400	Weak transcription	Spleen	Spleen
7	chr3:113179600-113215200	Weak transcription	HMEC	breast
8	chr3:113179600-113217200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:113179600-113232400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:113179600-113232800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:113184000-113233200	Weak transcription	Pancreas	Pancrea
12	chr3:113184800-113204800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:113187200-113207200	Weak transcription	Thymus	Thymus
14	chr3:113187200-113224400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:113187800-113204600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:113187800-113207000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:113187800-113209400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:113188000-113206000	Weak transcription	Liver	Liver
19	chr3:113188000-113206200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:113188000-113207000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:113188000-113211400	Weak transcription	Osteobl	bone
22	chr3:113188000-113215000	Weak transcription	NH-A	brain
23	chr3:113189000-113206000	Weak transcription	Adipose Nuclei	Adipose
24	chr3:113189000-113207200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:113189200-113207000	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:113189800-113208000	Weak transcription	Fetal Kidney	kidney
27	chr3:113189800-113209400	Weak transcription	Primary B cells from cord blood	blood
28	chr3:113190400-113206600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:113190400-113207200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:113190400-113210600	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr3:113191000-113215200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:113197400-113205400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:113199600-113217000	Weak transcription	Small Intestine	intestine
34	chr3:113201400-113232600	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:113201600-113209400	Weak transcription	GM12878-XiMat	blood
36	chr3:113202400-113209800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:113202400-113232800	Weak transcription	Fetal Brain Female	brain
38	chr3:113202600-113211600	Weak transcription	Brain Angular Gyrus	brain
39	chr3:113203200-113223600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:113203400-113204800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr3:113203400-113229200	Weak transcription	Lung	lung
42	chr3:113203600-113206200	Strong transcription	A549	lung
43	chr3:113203800-113204200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr3:113203800-113204200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:113203800-113204200	Genic enhancers	Fetal Thymus	thymus
46	chr3:113203800-113204200	ZNF genes & repeats	Hela-S3	cervix
47	chr3:113203800-113204400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr3:113203800-113204400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
49	chr3:113203800-113204400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:113203800-113204400	ZNF genes & repeats	Aorta	Aorta

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