Variant report

Variant	rs9810754
Chromosome Location	chr3:113276812-113276813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113276000..113278801-chr3:113288108..113290527,2	MCF-7	breast:
2	chr3:113269071..113270721-chr3:113276084..113277953,2	MCF-7	breast:
3	chr3:113274620..113277529-chr3:113285320..113288122,4	MCF-7	breast:
4	chr3:113219180..113221575-chr3:113276226..113279044,2	MCF-7	breast:
5	chr3:113254658..113255498-chr3:113275897..113276863,4	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13326562	0.81[EUR][1000 genomes]
rs13327031	0.81[EUR][1000 genomes]
rs13353449	0.81[EUR][1000 genomes]
rs2399487	1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs28539944	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28614095	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4419353	1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs6438154	0.81[EUR][1000 genomes]
rs6763234	0.81[EUR][1000 genomes]
rs6779241	0.81[EUR][1000 genomes]
rs6780720	0.81[EUR][1000 genomes]
rs6781507	0.81[EUR][1000 genomes]
rs6797630	1.00[CEU][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6808103	0.81[EUR][1000 genomes]
rs72950893	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72950895	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7625829	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7629636	0.81[EUR][1000 genomes]
rs7645188	0.81[EUR][1000 genomes]
rs9810059	1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs9827490	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9827772	1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9829540	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9846529	1.00[EUR][1000 genomes]
rs9851183	0.81[EUR][1000 genomes]
rs9852068	0.81[EUR][1000 genomes]
rs9860473	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9878186	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:113257200-113277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
6	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr3:113267400-113278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:113268200-113279400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:113271000-113277600	Enhancers	HepG2	liver
10	chr3:113274000-113278200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:113274400-113278800	Weak transcription	Primary T cells from cord blood	blood
12	chr3:113275200-113277000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:113275200-113277000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:113275200-113277000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:113275200-113277000	Enhancers	HMEC	breast
16	chr3:113276000-113277600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr3:113276000-113277600	Flanking Active TSS	A549	lung
18	chr3:113276200-113277000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:113276200-113277000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:113276200-113277600	Genic enhancers	GM12878-XiMat	blood
21	chr3:113276200-113278400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:113276200-113281400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr3:113276400-113277000	Enhancers	Duodenum Mucosa	Duodenum
24	chr3:113276400-113277000	Enhancers	NHEK	skin
25	chr3:113276400-113278000	Enhancers	Stomach Mucosa	stomach
26	chr3:113276400-113281000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr3:113276600-113277000	Strong transcription	Primary B cells from peripheral blood	blood
28	chr3:113276600-113277000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr3:113276600-113277600	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr3:113276600-113279000	Weak transcription	Spleen	Spleen
31	chr3:113276800-113278000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:113276800-113279200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:113276800-113279600	Weak transcription	HUVEC	blood vessel
34	chr3:113276800-113280800	Weak transcription	Gastric	stomach
35	chr3:113276800-113284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr3:113276800-113294200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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