Variant report

Variant	rs67838133
Chromosome Location	chr3:99243449-99243450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10514745	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10935829	0.92[AFR][1000 genomes]
rs11919834	0.82[ASN][1000 genomes]
rs11929322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12486853	0.86[ASN][1000 genomes]
rs12488756	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16841332	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17775122	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2342599	0.92[AFR][1000 genomes]
rs56300575	0.82[ASN][1000 genomes]
rs66797762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926449	0.90[AFR][1000 genomes]
rs72926450	0.90[AFR][1000 genomes]
rs7644179	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs938210	0.93[AFR][1000 genomes]
rs953512	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2572173	chr3:99242379-99245339	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
5	esv2354307	chr3:99243106-99245058	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3462201	chr3:99243125-99244981	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3462199	chr3:99243177-99244955	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3462203	chr3:99243190-99244924	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3462202	chr3:99243196-99244903	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv13001	chr3:99243238-99244869	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	esv3462200	chr3:99243249-99244875	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3462204	chr3:99243263-99244871	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99241800-99245800	Weak transcription	Fetal Heart	heart
2	chr3:99242600-99246000	Weak transcription	HSMMtube	muscle
3	chr3:99242600-99254000	Weak transcription	HUVEC	blood vessel
4	chr3:99243400-99243600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:99243400-99243600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:99243400-99245600	Weak transcription	Aorta	Aorta
7	chr3:99243400-99246000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:99243400-99248400	Weak transcription	NHDF-Ad	bronchial
9	chr3:99243400-99251000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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