Variant report

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10514745	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11919834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929322	0.89[AFR][1000 genomes]
rs12486853	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12488756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493715	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17775122	0.92[AFR][1000 genomes]
rs2342599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56300575	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66797762	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs67838133	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs72926449	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926450	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72926452	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7644179	0.89[AFR][1000 genomes]
rs938210	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs953512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99255600-99262000	Weak transcription	NHLF	lung
3	chr3:99256400-99261800	Weak transcription	Placenta	Placenta
4	chr3:99256600-99261800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:99256600-99261800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:99256600-99261800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:99256600-99263800	Weak transcription	Aorta	Aorta
8	chr3:99256800-99261800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:99256800-99261800	Weak transcription	Osteobl	bone
10	chr3:99256800-99262000	Weak transcription	NHDF-Ad	bronchial
11	chr3:99258600-99261800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:99259800-99261800	Enhancers	NHEK	skin
13	chr3:99260800-99264600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:99260800-99264800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:99261200-99261800	Enhancers	HepG2	liver
16	chr3:99261200-99264800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:99261200-99265600	Enhancers	Hela-S3	cervix
18	chr3:99261400-99264400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:99261400-99264400	Enhancers	HMEC	breast
20	chr3:99261600-99262000	Weak transcription	NH-A	brain
21	chr3:99261600-99262400	Flanking Active TSS	HUVEC	blood vessel
22	chr3:99261600-99265600	Enhancers	HSMM	muscle

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