Variant report

Variant	rs72926452
Chromosome Location	chr3:99203899-99203900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10514745	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10935829	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919834	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11929322	0.81[ASN][1000 genomes]
rs12486853	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12488756	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12493715	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16841332	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17775122	0.81[ASN][1000 genomes]
rs2342599	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56300575	0.92[EUR][1000 genomes]
rs72926449	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72926450	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644179	0.81[ASN][1000 genomes]
rs938210	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953512	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv3916	chr3:99186008-99232052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1829957	chr3:99203330-99208129	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99202600-99204400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr3:99202600-99204800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:99203200-99204800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:99203400-99204200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:99203400-99204200	Enhancers	HUVEC	blood vessel
6	chr3:99203400-99204600	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:99203400-99204800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:99203600-99204200	Enhancers	NH-A	brain
9	chr3:99203600-99204200	Enhancers	Osteobl	bone
10	chr3:99203800-99204200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:99203800-99204200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr3:99203800-99204400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:99203800-99204600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:99203800-99204600	Enhancers	NHDF-Ad	bronchial
15	chr3:99203800-99204800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:99203800-99204800	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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