Variant report

Variant	rs6784464
Chromosome Location	chr3:179306666-179306667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:179302451-179309594	K562	blood:	n/a	n/a
2	POLR2A	chr3:179306606-179306846	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr3:179306135-179309237	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr3:179306657-179307446	PFSK-1	brain:	n/a	n/a
5	POLR2A	chr3:179303815-179307629	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179304870..179312728-chr3:179313083..179319230,13	K562	blood:
2	chr3:179285283..179288140-chr3:179305577..179307797,2	K562	blood:

Variant related genes	Relation type
ENSG00000272660	TF binding region
ENSG00000136518	Chromatin interaction

rs_ID	r²[population]
rs9811751	1.00[CEU][hapmap]
rs9871045	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9872192	1.00[CEU][hapmap]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179281800-179315000	Weak transcription	Esophagus	oesophagus
2	chr3:179282000-179316000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:179282000-179321200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:179282000-179321800	Weak transcription	Aorta	Aorta
5	chr3:179282400-179311000	Weak transcription	Stomach Mucosa	stomach
6	chr3:179286400-179319800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:179286600-179316200	Strong transcription	Dnd41	blood
8	chr3:179286600-179319600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr3:179286600-179320800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:179286800-179320400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:179287000-179320800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:179287400-179320000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:179287400-179320200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:179287400-179320200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:179287400-179320200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:179287400-179320200	Strong transcription	Fetal Thymus	thymus
17	chr3:179287400-179320400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr3:179287400-179320600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:179287400-179320600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:179287600-179320000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr3:179287600-179320000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:179287600-179320200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:179287800-179320000	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:179287800-179320800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:179289600-179312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:179289800-179310600	Weak transcription	Small Intestine	intestine
27	chr3:179290800-179319200	Strong transcription	Fetal Intestine Large	intestine
28	chr3:179292000-179320200	Strong transcription	Primary B cells from peripheral blood	blood
29	chr3:179292000-179320800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr3:179292000-179320800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:179292200-179308600	Strong transcription	Adipose Nuclei	Adipose
32	chr3:179292200-179309600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr3:179292200-179312000	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr3:179292200-179320000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr3:179292400-179307000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:179292800-179307400	Strong transcription	Brain Germinal Matrix	brain
37	chr3:179293400-179316000	Weak transcription	Spleen	Spleen
38	chr3:179293600-179321000	Weak transcription	Gastric	stomach
39	chr3:179294200-179321200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr3:179294800-179307000	Weak transcription	Fetal Heart	heart
41	chr3:179294800-179307200	Weak transcription	Psoas Muscle	Psoas
42	chr3:179294800-179313400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr3:179294800-179315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr3:179297000-179320200	Strong transcription	Liver	Liver
45	chr3:179297400-179310600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:179297600-179320200	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr3:179297800-179311600	Strong transcription	GM12878-XiMat	blood
48	chr3:179297800-179320000	Strong transcription	HUVEC	blood vessel
49	chr3:179298000-179319600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:179298000-179320200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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