Variant report

Variant	rs6784500
Chromosome Location	chr3:134488393-134488394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11915986	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922047	1.00[YRI][hapmap]
rs6439518	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6795746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134484400-134489800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134487000-134489200	Enhancers	Fetal Intestine Large	intestine
3	chr3:134487200-134489800	Enhancers	Fetal Intestine Small	intestine
4	chr3:134487400-134489000	Enhancers	Duodenum Mucosa	Duodenum
5	chr3:134487400-134489000	Enhancers	Pancreas	Pancrea
6	chr3:134487600-134489000	Enhancers	Stomach Mucosa	stomach
7	chr3:134488000-134488800	Enhancers	Psoas Muscle	Psoas
8	chr3:134488000-134488800	Weak transcription	Small Intestine	intestine
9	chr3:134488000-134492000	Weak transcription	Fetal Heart	heart
10	chr3:134488200-134488400	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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