Variant report

Variant	rs6784997
Chromosome Location	chr3:100240509-100240510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100208890..100211504-chr3:100239607..100241704,2	MCF-7	breast:
2	chr2:217362499..217364288-chr3:100238945..100241543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197756	Chromatin interaction
ENSG00000181458	Chromatin interaction
ENSG00000232485	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28445775	0.86[AFR][1000 genomes]
rs7627378	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100235200-100242000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr3:100235800-100244800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr3:100236400-100242600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:100237000-100240600	Weak transcription	GM12878-XiMat	blood
5	chr3:100237200-100240600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:100237600-100241600	Weak transcription	HepG2	liver
7	chr3:100237600-100244200	Weak transcription	NH-A	brain
8	chr3:100238000-100244400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:100238000-100244400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:100238000-100252600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:100238000-100265400	Weak transcription	HSMMtube	muscle
12	chr3:100238200-100240600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:100238200-100244400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:100238200-100244400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:100238200-100244400	Weak transcription	HSMM	muscle
16	chr3:100238400-100244200	Weak transcription	NHDF-Ad	bronchial
17	chr3:100238800-100243800	Weak transcription	HMEC	breast
18	chr3:100239000-100241000	Strong transcription	Fetal Muscle Leg	muscle
19	chr3:100239000-100244200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:100239000-100244600	Weak transcription	Spleen	Spleen
21	chr3:100239200-100241400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:100239200-100242200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:100239200-100243200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:100239200-100243200	Strong transcription	Fetal Lung	lung
25	chr3:100239200-100244800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr3:100239400-100242000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:100239400-100242200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:100239400-100242200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:100239400-100242200	Strong transcription	Stomach Smooth Muscle	stomach
30	chr3:100239400-100242400	Strong transcription	Ovary	ovary
31	chr3:100239400-100245000	Strong transcription	Fetal Stomach	stomach
32	chr3:100239400-100245200	Strong transcription	Aorta	Aorta
33	chr3:100239600-100241200	Enhancers	Hela-S3	cervix
34	chr3:100239600-100241600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr3:100239600-100242800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:100239800-100240800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:100239800-100241200	Enhancers	NHEK	skin
38	chr3:100240000-100240600	Weak transcription	Liver	Liver
39	chr3:100240400-100240600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:100240400-100240600	Enhancers	K562	blood
41	chr3:100240400-100240800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:100240400-100242200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:100240400-100242200	Strong transcription	Fetal Muscle Trunk	muscle

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