Variant report

Variant	rs28445775
Chromosome Location	chr3:100226793-100226794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1185984	1.00[EUR][1000 genomes]
rs1300266	1.00[EUR][1000 genomes]
rs2583657	1.00[EUR][1000 genomes]
rs55958541	1.00[EUR][1000 genomes]
rs58520282	1.00[EUR][1000 genomes]
rs61311352	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784997	0.86[AFR][1000 genomes]
rs6788541	1.00[EUR][1000 genomes]
rs7429689	1.00[EUR][1000 genomes]
rs7627378	0.94[AFR][1000 genomes]
rs7634763	1.00[EUR][1000 genomes]
rs7645051	1.00[EUR][1000 genomes]
rs9820789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100216200-100229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:100220400-100226800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:100224800-100226800	Weak transcription	Aorta	Aorta
4	chr3:100225400-100226800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:100225400-100236800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:100225800-100226800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:100225800-100235000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links