Variant report

Variant	rs7634763
Chromosome Location	chr3:100222381-100222382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1185984	1.00[EUR][1000 genomes]
rs1300266	1.00[EUR][1000 genomes]
rs2583657	1.00[EUR][1000 genomes]
rs28445775	1.00[EUR][1000 genomes]
rs55958541	1.00[EUR][1000 genomes]
rs58520282	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61311352	1.00[EUR][1000 genomes]
rs6788541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7429689	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100212400-100222800	Weak transcription	Ovary	ovary
2	chr3:100212800-100224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:100214000-100223600	Weak transcription	Fetal Lung	lung
4	chr3:100216200-100224400	Weak transcription	HSMMtube	muscle
5	chr3:100216200-100225400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:100216200-100229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:100217400-100224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:100219800-100224800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:100220200-100224600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:100220400-100223600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:100220400-100224200	Weak transcription	Liver	Liver
12	chr3:100220400-100224800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:100220400-100226800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:100220600-100224800	Weak transcription	Osteobl	bone
15	chr3:100221200-100224600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:100222200-100223000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:100222200-100223000	Enhancers	GM12878-XiMat	blood
18	chr3:100222200-100223000	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links