Variant report

Variant	rs58520282
Chromosome Location	chr3:100216376-100216377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1185984	1.00[EUR][1000 genomes]
rs2583657	1.00[EUR][1000 genomes]
rs28445775	1.00[EUR][1000 genomes]
rs55958541	1.00[EUR][1000 genomes]
rs61311352	1.00[EUR][1000 genomes]
rs6788541	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7429689	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7634763	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7645051	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9820789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100212400-100219200	Weak transcription	Aorta	Aorta
2	chr3:100212400-100222800	Weak transcription	Ovary	ovary
3	chr3:100212800-100217800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:100212800-100224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:100213200-100216400	Weak transcription	Fetal Stomach	stomach
6	chr3:100213400-100217600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:100214000-100223600	Weak transcription	Fetal Lung	lung
8	chr3:100214400-100216400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:100214400-100216400	Enhancers	NHDF-Ad	bronchial
10	chr3:100214400-100217400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:100214600-100219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:100214800-100216400	Enhancers	HMEC	breast
13	chr3:100214800-100216800	Enhancers	NHEK	skin
14	chr3:100215000-100216400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:100215200-100216400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:100215200-100216400	Enhancers	NH-A	brain
17	chr3:100215400-100216400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:100215400-100218600	Weak transcription	Liver	Liver
19	chr3:100215600-100217400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:100215800-100216400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:100215800-100219400	Weak transcription	Osteobl	bone
22	chr3:100216000-100216400	Enhancers	GM12878-XiMat	blood
23	chr3:100216000-100218600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:100216200-100218400	Weak transcription	HSMM	muscle
25	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:100216200-100224400	Weak transcription	HSMMtube	muscle
29	chr3:100216200-100225400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:100216200-100229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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