Variant report

Variant	rs7429689
Chromosome Location	chr3:100218719-100218720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100210709..100213692-chr3:100216752..100220547,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181458	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1185984	1.00[EUR][1000 genomes]
rs2583657	1.00[EUR][1000 genomes]
rs28445775	1.00[EUR][1000 genomes]
rs55958541	1.00[EUR][1000 genomes]
rs58520282	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61311352	1.00[EUR][1000 genomes]
rs6788541	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634763	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7645051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9820789	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877218	chr3:100176360-100267619	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100212400-100219200	Weak transcription	Aorta	Aorta
2	chr3:100212400-100222800	Weak transcription	Ovary	ovary
3	chr3:100212800-100224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:100214000-100223600	Weak transcription	Fetal Lung	lung
5	chr3:100214600-100219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:100215800-100219400	Weak transcription	Osteobl	bone
7	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:100216200-100219200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:100216200-100224400	Weak transcription	HSMMtube	muscle
11	chr3:100216200-100225400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:100216200-100229000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:100216400-100219400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:100216400-100219400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:100217400-100224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:100217800-100220000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:100218600-100219000	Weak transcription	HSMM	muscle
18	chr3:100218600-100219800	Enhancers	Liver	Liver
19	chr3:100218600-100220400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr3:100218600-100221200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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