Variant report

Variant	rs6785009
Chromosome Location	chr3:143533401-143533402
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143531756..143533614-chr3:143541669..143543725,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16854231	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009935	chr3:143497700-143610852	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1001076	chr3:143513526-143547076	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv536747	chr3:143513526-143547076	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143513600-143533600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:143514200-143544200	Weak transcription	Primary T cells from cord blood	blood
3	chr3:143528400-143533600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:143529600-143540600	Weak transcription	Brain Angular Gyrus	brain
5	chr3:143529600-143543800	Weak transcription	Stomach Mucosa	stomach
6	chr3:143530000-143533600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:143530000-143538800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:143530600-143539800	Weak transcription	Ovary	ovary
9	chr3:143530600-143540600	Weak transcription	Placenta	Placenta
10	chr3:143530800-143540800	Weak transcription	Fetal Stomach	stomach
11	chr3:143531000-143539800	Weak transcription	Adipose Nuclei	Adipose
12	chr3:143531000-143543200	Weak transcription	NHDF-Ad	bronchial
13	chr3:143531400-143539000	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:143531800-143539400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:143531800-143543200	Weak transcription	Aorta	Aorta
16	chr3:143532800-143533800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:143532800-143534000	Enhancers	GM12878-XiMat	blood
18	chr3:143532800-143534400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:143532800-143534400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr3:143533000-143533800	Enhancers	Spleen	Spleen
21	chr3:143533000-143533800	Enhancers	NHLF	lung
22	chr3:143533000-143534000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr3:143533000-143534200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:143533000-143534400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:143533200-143533600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr3:143533200-143533600	Enhancers	Fetal Lung	lung
27	chr3:143533200-143533600	Weak transcription	Right Atrium	heart
28	chr3:143533200-143533800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:143533200-143534000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:143533200-143534000	Enhancers	Primary B cells from peripheral blood	blood
31	chr3:143533200-143534000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr3:143533200-143534400	Enhancers	Fetal Thymus	thymus
33	chr3:143533400-143533800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr3:143533400-143533800	Enhancers	Primary B cells from cord blood	blood
35	chr3:143533400-143533800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:143533400-143533800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:143533400-143534200	Enhancers	Primary hematopoietic stem cells	blood
38	chr3:143533400-143534400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:143533400-143534400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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