Variant report

Variant	rs16854231
Chromosome Location	chr3:143474830-143474831
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16853906	1.00[EUR][1000 genomes]
rs16854235	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3894056	1.00[EUR][1000 genomes]
rs58518314	1.00[EUR][1000 genomes]
rs6785009	1.00[MEX][hapmap]
rs72993546	1.00[EUR][1000 genomes]
rs73001769	1.00[EUR][1000 genomes]
rs73001776	1.00[EUR][1000 genomes]
rs73005545	1.00[EUR][1000 genomes]
rs73009383	1.00[EUR][1000 genomes]
rs73009477	1.00[EUR][1000 genomes]
rs7647113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877567	chr3:143438124-143478454	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3418674	chr3:143457005-143558357	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143450800-143488600	Weak transcription	Ovary	ovary
2	chr3:143457200-143488600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:143458000-143494400	Weak transcription	Psoas Muscle	Psoas
4	chr3:143465000-143490600	Weak transcription	Esophagus	oesophagus
5	chr3:143471600-143477400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:143471800-143475000	Enhancers	Colon Smooth Muscle	Colon
7	chr3:143472600-143476600	Weak transcription	Dnd41	blood
8	chr3:143472800-143476800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:143473600-143475200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:143473600-143476400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:143473600-143477000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:143473800-143475600	Weak transcription	Primary T cells from cord blood	blood
13	chr3:143474000-143476200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:143474000-143477200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:143474200-143475800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:143474200-143476800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:143474800-143475000	Enhancers	Fetal Lung	lung
18	chr3:143474800-143475000	Enhancers	Right Atrium	heart
19	chr3:143474800-143476000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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