Variant report

Variant	rs73001776
Chromosome Location	chr3:143318695-143318696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143312590..143314218-chr3:143316587..143318859,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16853906	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16854231	1.00[EUR][1000 genomes]
rs16854235	1.00[EUR][1000 genomes]
rs3894056	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58518314	1.00[EUR][1000 genomes]
rs6781492	1.00[EUR][1000 genomes]
rs72993546	1.00[EUR][1000 genomes]
rs73001769	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73005545	1.00[EUR][1000 genomes]
rs73009383	1.00[EUR][1000 genomes]
rs73009477	1.00[EUR][1000 genomes]
rs7610497	1.00[EUR][1000 genomes]
rs7631610	1.00[EUR][1000 genomes]
rs7632231	1.00[EUR][1000 genomes]
rs7636796	1.00[EUR][1000 genomes]
rs7647113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143313600-143321000	Weak transcription	Gastric	stomach
5	chr3:143314000-143319600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:143314800-143319400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:143314800-143319600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:143315000-143319600	Weak transcription	Primary B cells from cord blood	blood
9	chr3:143315000-143319600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:143315000-143319600	Weak transcription	Small Intestine	intestine
11	chr3:143316400-143318800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:143316400-143320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:143316400-143321200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:143317000-143322000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:143317400-143323200	Weak transcription	Ovary	ovary
16	chr3:143317600-143320000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:143317600-143320200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:143317800-143319800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr3:143318000-143319200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:143318000-143319400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:143318000-143319800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:143318000-143320600	Weak transcription	Fetal Kidney	kidney
23	chr3:143318000-143324000	Weak transcription	Brain Anterior Caudate	brain
24	chr3:143318200-143319400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:143318200-143319800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:143318400-143319400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:143318400-143319800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:143318400-143323800	Weak transcription	Brain Germinal Matrix	brain
29	chr3:143318600-143319600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:143318600-143319600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:143318600-143319800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr3:143318600-143319800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:143318600-143320400	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:143318600-143320600	Weak transcription	Fetal Lung	lung
35	chr3:143318600-143332600	Weak transcription	Brain Substantia Nigra	brain

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