Variant report

Variant	rs73005545
Chromosome Location	chr3:143363611-143363612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142790255..142790841-chr3:143363451..143364029,2	MCF-7	breast:
2	chr3:143152690..143153230-chr3:143363138..143363760,2	MCF-7	breast:
3	chr3:143152268..143153220-chr3:143363059..143363930,4	MCF-7	breast:
4	chr3:142648083..142648602-chr3:143363054..143363730,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11915855	1.00[AMR][1000 genomes]
rs11918424	1.00[AMR][1000 genomes]
rs16853853	1.00[AMR][1000 genomes]
rs16853882	1.00[AMR][1000 genomes]
rs16853906	1.00[EUR][1000 genomes]
rs16854231	1.00[EUR][1000 genomes]
rs16854235	1.00[EUR][1000 genomes]
rs2069163	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3894056	1.00[EUR][1000 genomes]
rs58518314	1.00[EUR][1000 genomes]
rs60313442	1.00[AMR][1000 genomes]
rs6781492	1.00[EUR][1000 genomes]
rs72993308	1.00[AMR][1000 genomes]
rs72993546	1.00[EUR][1000 genomes]
rs73001739	1.00[AMR][1000 genomes]
rs73001745	1.00[AMR][1000 genomes]
rs73001769	1.00[EUR][1000 genomes]
rs73001776	1.00[EUR][1000 genomes]
rs73005514	1.00[AMR][1000 genomes]
rs73007413	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007443	1.00[AMR][1000 genomes]
rs73009383	1.00[EUR][1000 genomes]
rs73009477	1.00[EUR][1000 genomes]
rs73009492	1.00[AMR][1000 genomes]
rs7610497	1.00[EUR][1000 genomes]
rs7613014	1.00[AMR][1000 genomes]
rs7631610	1.00[EUR][1000 genomes]
rs7632231	1.00[EUR][1000 genomes]
rs7632471	1.00[AMR][1000 genomes]
rs7635214	1.00[AMR][1000 genomes]
rs7647113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143328200-143376200	Weak transcription	Ovary	ovary
2	chr3:143351600-143369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:143354200-143373600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:143354200-143374000	Weak transcription	Esophagus	oesophagus
5	chr3:143357800-143369000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:143358200-143369000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:143358400-143371200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:143360200-143369600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:143361400-143373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:143361600-143364200	Enhancers	Dnd41	blood
11	chr3:143361800-143363800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:143362200-143363800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:143362400-143364000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:143362600-143363800	Enhancers	HSMM	muscle
15	chr3:143362600-143364000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:143362800-143364000	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:143362800-143364000	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:143363000-143364000	Enhancers	Colon Smooth Muscle	Colon
19	chr3:143363000-143364000	Enhancers	Fetal Lung	lung
20	chr3:143363200-143363800	Enhancers	HSMMtube	muscle
21	chr3:143363200-143364000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:143363400-143367200	Weak transcription	Gastric	stomach
23	chr3:143363400-143369000	Weak transcription	Primary B cells from cord blood	blood
24	chr3:143363400-143371200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:143363400-143372800	Weak transcription	Brain Anterior Caudate	brain
26	chr3:143363400-143373800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr3:143363400-143373800	Weak transcription	Brain Hippocampus Middle	brain
28	chr3:143363400-143377600	Weak transcription	NHDF-Ad	bronchial
29	chr3:143363600-143363800	Flanking Active TSS	Fetal Kidney	kidney
30	chr3:143363600-143364400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:143363600-143367000	Weak transcription	HUVEC	blood vessel
32	chr3:143363600-143368600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr3:143363600-143375400	Weak transcription	Fetal Thymus	thymus
34	chr3:143363600-143377800	Weak transcription	Adipose Nuclei	Adipose
35	chr3:143363600-143379000	Weak transcription	Fetal Muscle Leg	muscle

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