Variant report

Variant	rs16853882
Chromosome Location	chr3:143309934-143309935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143301280..143303910-chr3:143308205..143310957,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11915855	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11918424	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11921256	1.00[YRI][hapmap]
rs16853853	1.00[AMR][1000 genomes]
rs2069163	1.00[AMR][1000 genomes]
rs60313442	1.00[AMR][1000 genomes]
rs72993308	1.00[AMR][1000 genomes]
rs73001739	1.00[AMR][1000 genomes]
rs73001745	1.00[AMR][1000 genomes]
rs73005514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005545	1.00[AMR][1000 genomes]
rs73007413	1.00[AMR][1000 genomes]
rs73007443	1.00[AMR][1000 genomes]
rs73009492	1.00[AMR][1000 genomes]
rs7613014	1.00[AMR][1000 genomes]
rs7632471	1.00[AMR][1000 genomes]
rs7635214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:143294400-143317800	Weak transcription	Brain Substantia Nigra	brain
3	chr3:143296200-143313200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:143298600-143312600	Weak transcription	Gastric	stomach
7	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
8	chr3:143302000-143311200	Weak transcription	Placenta	Placenta
9	chr3:143305000-143310600	Weak transcription	Pancreas	Pancrea
10	chr3:143305200-143312600	Weak transcription	Fetal Lung	lung
11	chr3:143306000-143310400	Weak transcription	Stomach Mucosa	stomach
12	chr3:143306000-143314000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:143306200-143310600	Weak transcription	Small Intestine	intestine
14	chr3:143306400-143311000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:143307200-143313000	Weak transcription	Fetal Thymus	thymus
16	chr3:143308600-143310200	Enhancers	K562	blood
17	chr3:143308600-143310600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:143309400-143310200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:143309400-143310200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:143309600-143310000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:143309600-143310000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:143309600-143311000	Enhancers	Fetal Intestine Small	intestine
23	chr3:143309600-143311400	Enhancers	Fetal Intestine Large	intestine
24	chr3:143309800-143316000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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