Variant report

Variant	rs2069163
Chromosome Location	chr3:143368445-143368446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11915855	1.00[AMR][1000 genomes]
rs11918424	1.00[AMR][1000 genomes]
rs16853853	1.00[AMR][1000 genomes]
rs16853882	1.00[AMR][1000 genomes]
rs60313442	1.00[AMR][1000 genomes]
rs72993308	1.00[AMR][1000 genomes]
rs73001739	1.00[AMR][1000 genomes]
rs73001745	1.00[AMR][1000 genomes]
rs73005514	1.00[AMR][1000 genomes]
rs73005545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007443	1.00[AMR][1000 genomes]
rs73009492	1.00[AMR][1000 genomes]
rs7613014	1.00[AMR][1000 genomes]
rs7632471	1.00[AMR][1000 genomes]
rs7635214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143328200-143376200	Weak transcription	Ovary	ovary
2	chr3:143351600-143369800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:143354200-143373600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:143354200-143374000	Weak transcription	Esophagus	oesophagus
5	chr3:143357800-143369000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:143358200-143369000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:143358400-143371200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:143360200-143369600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:143361400-143373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:143363400-143369000	Weak transcription	Primary B cells from cord blood	blood
11	chr3:143363400-143371200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:143363400-143372800	Weak transcription	Brain Anterior Caudate	brain
13	chr3:143363400-143373800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:143363400-143373800	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:143363400-143377600	Weak transcription	NHDF-Ad	bronchial
16	chr3:143363600-143368600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:143363600-143375400	Weak transcription	Fetal Thymus	thymus
18	chr3:143363600-143377800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:143363600-143379000	Weak transcription	Fetal Muscle Leg	muscle
20	chr3:143363800-143369000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:143363800-143373800	Weak transcription	HSMMtube	muscle
22	chr3:143364000-143369000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:143364000-143369600	Weak transcription	Fetal Lung	lung
24	chr3:143365200-143370800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:143365400-143368600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:143365800-143371200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:143367400-143369200	Weak transcription	Primary T cells from cord blood	blood
28	chr3:143367400-143390400	Weak transcription	Brain Substantia Nigra	brain
29	chr3:143367600-143369400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr3:143367600-143373200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:143367600-143375400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:143367800-143369200	Weak transcription	Lung	lung
33	chr3:143368000-143369600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:143368200-143370600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:143368200-143370600	Weak transcription	Liver	Liver
36	chr3:143368200-143372600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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