Variant report

Variant	rs11915855
Chromosome Location	chr3:143318268-143318269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143312590..143314218-chr3:143316587..143318859,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11918424	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11921256	1.00[YRI][hapmap]
rs16853853	1.00[AMR][1000 genomes]
rs16853882	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2069163	1.00[AMR][1000 genomes]
rs60313442	1.00[AMR][1000 genomes]
rs72993308	1.00[AMR][1000 genomes]
rs73001739	1.00[AMR][1000 genomes]
rs73001745	1.00[AMR][1000 genomes]
rs73005514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005545	1.00[AMR][1000 genomes]
rs73007413	1.00[AMR][1000 genomes]
rs73007443	1.00[AMR][1000 genomes]
rs73009492	1.00[AMR][1000 genomes]
rs7613014	1.00[AMR][1000 genomes]
rs7632471	1.00[AMR][1000 genomes]
rs7635214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143313600-143321000	Weak transcription	Gastric	stomach
5	chr3:143314000-143319600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:143314800-143319400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:143314800-143319600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:143315000-143319600	Weak transcription	Primary B cells from cord blood	blood
9	chr3:143315000-143319600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:143315000-143319600	Weak transcription	Small Intestine	intestine
11	chr3:143315600-143318600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:143315800-143318400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:143315800-143318600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:143316200-143318400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:143316200-143318400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:143316200-143318600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr3:143316400-143318800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:143316400-143320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:143316400-143321200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr3:143316600-143318600	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr3:143317000-143318600	Enhancers	Fetal Lung	lung
22	chr3:143317000-143322000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr3:143317200-143318400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:143317400-143318400	Enhancers	Brain Germinal Matrix	brain
25	chr3:143317400-143323200	Weak transcription	Ovary	ovary
26	chr3:143317600-143320000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:143317600-143320200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:143317800-143318600	Enhancers	Brain Substantia Nigra	brain
29	chr3:143317800-143319800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr3:143318000-143319200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr3:143318000-143319400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:143318000-143319800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr3:143318000-143320600	Weak transcription	Fetal Kidney	kidney
34	chr3:143318000-143324000	Weak transcription	Brain Anterior Caudate	brain
35	chr3:143318200-143319400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:143318200-143319800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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