Variant report

Variant	rs60313442
Chromosome Location	chr3:143454120-143454121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11915855	1.00[AMR][1000 genomes]
rs11918424	1.00[AMR][1000 genomes]
rs16853853	1.00[AMR][1000 genomes]
rs16853882	1.00[AMR][1000 genomes]
rs2069163	1.00[AMR][1000 genomes]
rs72993308	1.00[AMR][1000 genomes]
rs73001739	1.00[AMR][1000 genomes]
rs73001745	1.00[AMR][1000 genomes]
rs73005514	1.00[AMR][1000 genomes]
rs73005545	1.00[AMR][1000 genomes]
rs73007413	1.00[AMR][1000 genomes]
rs73007443	1.00[AMR][1000 genomes]
rs73009492	1.00[AMR][1000 genomes]
rs7613014	1.00[AMR][1000 genomes]
rs7632471	1.00[AMR][1000 genomes]
rs7635214	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv3411176	chr3:143423880-143457059	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv877567	chr3:143438124-143478454	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:143438400-143469800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:143438600-143454200	Weak transcription	Primary T cells from cord blood	blood
4	chr3:143442200-143470200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:143446800-143454600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:143446800-143460400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:143447400-143469800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:143447600-143454800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:143450800-143457800	Weak transcription	Fetal Lung	lung
10	chr3:143450800-143488600	Weak transcription	Ovary	ovary
11	chr3:143451200-143454600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:143451200-143455200	Weak transcription	HSMM	muscle
13	chr3:143451400-143458600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:143453600-143455800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr3:143453800-143455400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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