Variant report

Variant	rs7631610
Chromosome Location	chr3:143177942-143177943
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16853906	1.00[EUR][1000 genomes]
rs3894056	1.00[EUR][1000 genomes]
rs6781492	1.00[EUR][1000 genomes]
rs73001769	1.00[EUR][1000 genomes]
rs73001776	1.00[EUR][1000 genomes]
rs73005545	1.00[EUR][1000 genomes]
rs7610497	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7632231	1.00[EUR][1000 genomes]
rs7636796	1.00[EUR][1000 genomes]
rs7647113	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143159600-143200800	Weak transcription	Esophagus	oesophagus
2	chr3:143163400-143181400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:143163400-143196800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:143163600-143184000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:143163600-143187000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:143163800-143183600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:143163800-143196400	Weak transcription	Fetal Stomach	stomach
8	chr3:143163800-143203400	Weak transcription	Ovary	ovary
9	chr3:143170000-143184400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:143170400-143181400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr3:143170400-143185200	Weak transcription	Primary B cells from cord blood	blood
12	chr3:143174400-143220400	Weak transcription	Fetal Lung	lung
13	chr3:143176800-143220400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:143177200-143200800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:143177400-143184600	Weak transcription	Adipose Nuclei	Adipose
16	chr3:143177600-143183200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:143177800-143204400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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