Variant report

Variant	rs678502
Chromosome Location	chr10:27557951-27557952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2483488	0.93[ASN][1000 genomes]
rs58199223	0.84[AMR][1000 genomes]
rs58229025	0.84[AMR][1000 genomes]
rs58452779	0.84[AMR][1000 genomes]
rs58818625	0.84[AMR][1000 genomes]
rs59001370	0.84[AMR][1000 genomes]
rs60603832	0.84[AMR][1000 genomes]
rs60636886	0.84[AMR][1000 genomes]
rs61249155	0.84[AMR][1000 genomes]
rs628123	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651134	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs675346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901682	0.84[AMR][1000 genomes]
rs7908050	0.84[AMR][1000 genomes]
rs9299840	0.84[AMR][1000 genomes]
rs9919348	0.84[AMR][1000 genomes]
rs9919361	0.84[AMR][1000 genomes]
rs9919373	0.84[AMR][1000 genomes]
rs9919432	0.84[AMR][1000 genomes]
rs9919455	0.84[AMR][1000 genomes]
rs9919481	0.84[AMR][1000 genomes]
rs9919495	0.84[AMR][1000 genomes]
rs9919506	0.84[AMR][1000 genomes]
rs9919514	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs678502	ACBD5	cis	Thyroid	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27556400-27569400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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