Variant report

Variant	rs7908050
Chromosome Location	chr10:27554385-27554386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27531009..27532582-chr10:27554298..27557001,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000262412	Chromatin interaction
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1002351	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10159601	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10764682	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs10764687	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10829209	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11015502	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs11015507	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs11015602	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11015612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11015614	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11015615	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11813101	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11816764	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11816767	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12240963	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12242378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243607	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12244182	1.00[JPT][hapmap]
rs12245098	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251316	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12257786	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12259138	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12259499	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1557163	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1557164	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1557166	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16927663	0.82[EUR][1000 genomes]
rs2275751	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs3780923	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs3818962	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3818968	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4522064	0.82[EUR][1000 genomes]
rs56787693	0.89[ASN][1000 genomes]
rs57095080	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57563582	0.87[ASN][1000 genomes]
rs58199223	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58229025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58452779	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58818625	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59001370	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60603832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60636886	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61249155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61607571	0.89[ASN][1000 genomes]
rs61644623	0.93[ASN][1000 genomes]
rs61737707	0.84[ASN][1000 genomes]
rs61737928	0.84[ASN][1000 genomes]
rs6482612	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs651134	1.00[TSI][hapmap]
rs678502	0.84[AMR][1000 genomes]
rs7068463	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7069127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7069761	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs7070377	0.84[ASN][1000 genomes]
rs7070508	0.84[ASN][1000 genomes]
rs7072412	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7080784	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084515	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7086946	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7087198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs7091897	0.84[ASN][1000 genomes]
rs7092591	0.84[ASN][1000 genomes]
rs7092612	0.84[ASN][1000 genomes]
rs7358044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7358057	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7900802	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7901682	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902900	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7906528	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7909359	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7910142	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9299840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651377	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs9919348	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919361	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919373	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919432	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919455	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919495	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919506	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919514	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7908050	ACBD5	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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