Variant report

Variant	rs9651377
Chromosome Location	chr10:27367098-27367099
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1002351	0.88[JPT][hapmap]
rs10159601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764682	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10764687	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10829175	0.98[ASN][1000 genomes]
rs10829177	0.98[ASN][1000 genomes]
rs10829179	0.98[ASN][1000 genomes]
rs10829182	0.98[ASN][1000 genomes]
rs10829187	0.88[ASN][1000 genomes]
rs10829189	0.88[ASN][1000 genomes]
rs10829196	0.85[ASN][1000 genomes]
rs10829209	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs11015444	0.89[ASN][1000 genomes]
rs11015448	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11015459	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015462	0.92[ASN][1000 genomes]
rs11015465	0.92[ASN][1000 genomes]
rs11015466	0.92[ASN][1000 genomes]
rs11015470	0.92[ASN][1000 genomes]
rs11015471	0.92[ASN][1000 genomes]
rs11015476	0.92[ASN][1000 genomes]
rs11015478	0.92[ASN][1000 genomes]
rs11015479	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015483	0.92[ASN][1000 genomes]
rs11015490	0.87[ASN][1000 genomes]
rs11015491	0.92[ASN][1000 genomes]
rs11015492	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015493	0.92[ASN][1000 genomes]
rs11015494	0.92[ASN][1000 genomes]
rs11015495	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015496	0.92[ASN][1000 genomes]
rs11015497	0.92[ASN][1000 genomes]
rs11015498	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015499	0.92[ASN][1000 genomes]
rs11015500	0.92[ASN][1000 genomes]
rs11015501	0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015502	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11015507	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015508	0.90[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11015524	0.98[ASN][1000 genomes]
rs11015562	0.85[ASN][1000 genomes]
rs11015602	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11015612	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11015614	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs11015615	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11813101	0.90[CHB][hapmap]
rs11816764	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs11816767	0.88[CHB][hapmap]
rs11819631	0.98[ASN][1000 genomes]
rs12240963	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12243607	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12244182	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12250059	0.98[ASN][1000 genomes]
rs12251316	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12257786	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12259138	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs12259499	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12263872	0.98[ASN][1000 genomes]
rs12266594	0.98[ASN][1000 genomes]
rs12354715	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12355227	0.88[ASN][1000 genomes]
rs12355949	0.89[ASN][1000 genomes]
rs12357873	0.93[ASN][1000 genomes]
rs12358854	0.92[ASN][1000 genomes]
rs12359281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1557163	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1557164	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1557166	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2274742	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2275751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2297148	0.98[ASN][1000 genomes]
rs3737054	0.83[YRI][hapmap]
rs3780923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3781097	0.89[ASN][1000 genomes]
rs3818962	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs3818968	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs3824692	0.90[ASN][1000 genomes]
rs4747582	0.90[ASN][1000 genomes]
rs4749220	0.88[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs61081993	0.89[ASN][1000 genomes]
rs61216393	0.87[ASN][1000 genomes]
rs6482590	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482612	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7068463	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7069127	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7069761	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7072412	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7080104	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7083360	0.92[ASN][1000 genomes]
rs7083739	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7084515	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs7086946	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7087198	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7096070	0.89[ASN][1000 genomes]
rs7358044	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs7358057	0.89[JPT][hapmap]
rs7897698	0.98[ASN][1000 genomes]
rs7900802	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs7902900	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7906528	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs7908050	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7909359	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs7910142	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs9299840	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs9731878	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9651377	MASTL	cis	lung	GTEx
rs9651377	MASTL	cis	Thyroid	GTEx
rs9651377	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:27328000-27388200	Weak transcription	K562	blood
10	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
11	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
12	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:27342000-27367600	Weak transcription	Stomach Mucosa	stomach
14	chr10:27350200-27387800	Weak transcription	HMEC	breast
15	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:27360400-27367400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr10:27360400-27367400	Strong transcription	Fetal Thymus	thymus
18	chr10:27360400-27368600	Strong transcription	Liver	Liver
19	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:27360600-27367400	Strong transcription	Primary B cells from cord blood	blood
23	chr10:27360600-27367800	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr10:27360600-27370400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr10:27360600-27371600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:27360600-27372000	Strong transcription	Adipose Nuclei	Adipose
27	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:27361000-27370000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:27361200-27368400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:27361200-27369000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr10:27361600-27388200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:27362000-27367200	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr10:27362000-27368200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:27362200-27373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:27362200-27388400	Weak transcription	Colonic Mucosa	Colon
36	chr10:27362400-27368400	Weak transcription	Lung	lung
37	chr10:27362400-27369600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:27362400-27371200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:27362400-27376200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:27362400-27377200	Weak transcription	Hela-S3	cervix
41	chr10:27362400-27388000	Weak transcription	Right Ventricle	heart
42	chr10:27362400-27388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:27362400-27388400	Weak transcription	Pancreas	Pancrea
44	chr10:27362600-27368400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:27362600-27368400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr10:27362600-27369600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:27362600-27373200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:27362600-27376600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:27362600-27376600	Weak transcription	Ovary	ovary
50	chr10:27362600-27376600	Weak transcription	Thymus	Thymus

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