Variant report

Variant	rs10764687
Chromosome Location	chr10:27475579-27475580
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27468624..27471267-chr10:27475372..27477159,2	K562	blood:

Extended variants
information (count: 158 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1002351	1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10159601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10466100	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10764670	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs10764681	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829175	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10829177	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10829179	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10829182	0.91[AMR][1000 genomes]
rs10829187	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829189	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829196	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829209	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10829214	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10829215	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10829216	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11015448	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs11015459	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs11015479	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs11015492	0.90[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs11015495	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs11015498	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11015502	0.91[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs11015507	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs11015524	0.91[AMR][1000 genomes]
rs11015562	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015584	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs11015602	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11015607	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11015608	0.95[ASN][1000 genomes]
rs11015609	0.95[ASN][1000 genomes]
rs11015610	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11015611	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11015612	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11015614	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11015615	0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11813084	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11813101	0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11813776	0.83[AMR][1000 genomes]
rs11815019	0.83[AMR][1000 genomes]
rs11816764	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11816767	0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11818136	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11818993	0.83[AMR][1000 genomes]
rs11819631	0.91[AMR][1000 genomes]
rs12098587	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12098618	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12218864	1.00[MEX][hapmap]
rs12240963	0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12241350	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12243607	0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12244182	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12246088	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12246158	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12247183	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12250059	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12251316	0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12253696	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12257786	0.81[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12259138	0.90[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12259499	0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12261094	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12262674	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12263872	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12266594	0.83[EUR][1000 genomes]
rs12268796	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12354715	0.91[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs12359281	1.00[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1557163	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1557164	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1557165	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1557166	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16927640	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16927646	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2274742	0.91[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs2275751	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs2297148	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34037342	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34613194	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34856168	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs36121140	1.00[ASN][1000 genomes]
rs3780923	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs3818962	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3818965	0.81[ASN][1000 genomes]
rs3818968	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3824594	1.00[ASN][1000 genomes]
rs41314978	0.95[ASN][1000 genomes]
rs4749220	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs55872244	0.81[ASN][1000 genomes]
rs55884764	0.81[ASN][1000 genomes]
rs57096075	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57470366	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57704178	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58326983	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58649395	1.00[ASN][1000 genomes]
rs58843203	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59116633	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59638069	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59935135	0.81[ASN][1000 genomes]
rs59947739	0.81[ASN][1000 genomes]
rs61125165	0.83[AMR][1000 genomes]
rs61686723	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6482590	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs6482605	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6482606	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6482609	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6482610	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6482611	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6482612	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7068182	0.87[ASN][1000 genomes]
rs7068463	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7069127	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7069761	0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7072412	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7074120	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7080104	0.91[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap]
rs7083739	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7084392	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7084515	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7085266	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7086946	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7087198	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7090639	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7358044	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7358057	1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs74126939	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74126942	0.87[ASN][1000 genomes]
rs74126943	0.87[ASN][1000 genomes]
rs74126946	0.81[ASN][1000 genomes]
rs7897124	0.87[ASN][1000 genomes]
rs7897698	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7898083	0.87[ASN][1000 genomes]
rs7898338	0.87[ASN][1000 genomes]
rs7898820	0.81[ASN][1000 genomes]
rs7900802	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7902900	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7903450	0.91[ASN][1000 genomes]
rs7904576	0.86[ASN][1000 genomes]
rs7906528	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7907326	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7908050	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7908434	0.91[ASN][1000 genomes]
rs7909359	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7910142	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7912056	0.81[ASN][1000 genomes]
rs7913638	0.81[ASN][1000 genomes]
rs7914017	0.81[ASN][1000 genomes]
rs7920178	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920608	0.93[ASN][1000 genomes]
rs7923708	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7923846	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9299840	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9651377	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs9731310	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3345352	chr10:27475474-27475707	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10764687	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27445000-27486200	Weak transcription	Fetal Heart	heart
2	chr10:27445400-27490800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:27446400-27476200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:27446400-27476400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:27446400-27490800	Weak transcription	Fetal Brain Male	brain
6	chr10:27446400-27499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:27446400-27508400	Weak transcription	Small Intestine	intestine
8	chr10:27446600-27476000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:27446600-27477200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:27447000-27476600	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:27447000-27477000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:27447000-27477800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:27447200-27476200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:27447200-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:27447200-27478000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:27447200-27478200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:27447400-27476600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:27447400-27477200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:27447400-27478200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:27448200-27476000	Strong transcription	Dnd41	blood
21	chr10:27449600-27487200	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:27453000-27487000	Weak transcription	Spleen	Spleen
23	chr10:27454800-27481200	Weak transcription	Brain Substantia Nigra	brain
24	chr10:27454800-27487000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:27455000-27478400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:27455000-27494600	Weak transcription	Aorta	Aorta
27	chr10:27455000-27495200	Weak transcription	Right Ventricle	heart
28	chr10:27455400-27492200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:27455600-27494600	Weak transcription	Pancreas	Pancrea
30	chr10:27455800-27485200	Weak transcription	Colonic Mucosa	Colon
31	chr10:27456200-27484200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:27456200-27484800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr10:27456200-27490800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:27456200-27496800	Weak transcription	Esophagus	oesophagus
35	chr10:27456800-27487000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:27457400-27481400	Weak transcription	NHLF	lung
37	chr10:27457600-27485200	Weak transcription	Brain Angular Gyrus	brain
38	chr10:27459000-27484400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:27459200-27489800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr10:27459400-27478200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr10:27461400-27476200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:27461800-27476600	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr10:27463400-27477000	Strong transcription	Placenta	Placenta
44	chr10:27464800-27492800	Weak transcription	HSMMtube	muscle
45	chr10:27465800-27476200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:27466000-27475600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr10:27466400-27478200	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr10:27466600-27481000	Weak transcription	NHDF-Ad	bronchial
49	chr10:27466600-27484600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:27466600-27484800	Weak transcription	Left Ventricle	heart

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