Variant report

Variant	rs6482605
Chromosome Location	chr10:27502288-27502289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27495142..27497027-chr10:27500759..27502307,2	K562	blood:

Extended variants
information (count: 140 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs1002351	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10159601	0.88[ASN][1000 genomes]
rs10466100	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764681	0.95[ASN][1000 genomes]
rs10764682	0.95[ASN][1000 genomes]
rs10764687	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10829187	0.85[ASN][1000 genomes]
rs10829189	0.85[ASN][1000 genomes]
rs10829196	0.88[ASN][1000 genomes]
rs10829209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829215	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829216	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015513	0.90[AMR][1000 genomes]
rs11015544	0.90[AMR][1000 genomes]
rs11015562	0.88[ASN][1000 genomes]
rs11015584	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015585	0.84[EUR][1000 genomes]
rs11015602	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015608	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015609	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015610	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015611	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015614	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11813084	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813776	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11815019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11816764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818136	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818993	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12098587	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12098618	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12240963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12241350	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243607	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12246088	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247183	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251316	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12253696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12257786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12259138	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12261094	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12261617	0.90[AMR][1000 genomes]
rs12262674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12268796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557164	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1557166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16927640	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927646	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275751	0.88[ASN][1000 genomes]
rs34037342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34613194	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34856168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36121140	0.95[ASN][1000 genomes]
rs3780923	0.88[ASN][1000 genomes]
rs3818962	0.86[ASN][1000 genomes]
rs3818965	0.86[ASN][1000 genomes]
rs3818968	0.86[ASN][1000 genomes]
rs3824594	0.95[ASN][1000 genomes]
rs41314978	1.00[ASN][1000 genomes]
rs55872244	0.86[ASN][1000 genomes]
rs55884764	0.86[ASN][1000 genomes]
rs57096075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57320669	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57470366	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57704178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58326983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58649395	0.95[ASN][1000 genomes]
rs58843203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59116633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59638069	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59935135	0.86[ASN][1000 genomes]
rs59947739	0.86[ASN][1000 genomes]
rs61082197	0.90[AMR][1000 genomes]
rs61125165	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61686723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61737707	0.80[ASN][1000 genomes]
rs61737928	0.80[ASN][1000 genomes]
rs6482599	0.90[AMR][1000 genomes]
rs6482606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482609	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482611	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7068182	0.93[ASN][1000 genomes]
rs7068463	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069127	0.80[ASN][1000 genomes]
rs7069761	0.80[ASN][1000 genomes]
rs7070377	0.80[ASN][1000 genomes]
rs7070508	0.80[ASN][1000 genomes]
rs7072412	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087198	0.82[ASN][1000 genomes]
rs7090639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091897	0.80[ASN][1000 genomes]
rs7092591	0.80[ASN][1000 genomes]
rs7092612	0.80[ASN][1000 genomes]
rs7358044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7358057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74126939	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126942	0.93[ASN][1000 genomes]
rs74126943	0.93[ASN][1000 genomes]
rs74126946	0.86[ASN][1000 genomes]
rs74126948	0.80[ASN][1000 genomes]
rs7897124	0.93[ASN][1000 genomes]
rs7898083	0.93[ASN][1000 genomes]
rs7898338	0.93[ASN][1000 genomes]
rs7898820	0.86[ASN][1000 genomes]
rs7900802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902900	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903450	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7904576	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7906528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7907326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7908434	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7909359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912056	0.86[ASN][1000 genomes]
rs7913638	0.86[ASN][1000 genomes]
rs7914017	0.86[ASN][1000 genomes]
rs7920178	0.95[ASN][1000 genomes]
rs7920608	0.94[ASN][1000 genomes]
rs7923708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9731310	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv894980	chr10:27477285-27526531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6482605	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27446400-27508400	Weak transcription	Small Intestine	intestine
2	chr10:27473200-27524200	Weak transcription	Stomach Mucosa	stomach
3	chr10:27474200-27512000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:27475600-27528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:27476200-27528600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:27481600-27527800	Weak transcription	Psoas Muscle	Psoas
7	chr10:27482600-27512600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:27483800-27512200	Strong transcription	Liver	Liver
9	chr10:27484000-27512400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr10:27484000-27512400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:27484000-27512400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr10:27484000-27512600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr10:27484200-27512400	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr10:27484600-27512400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:27484800-27510800	Strong transcription	Left Ventricle	heart
16	chr10:27484800-27512400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr10:27484800-27513000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:27484800-27513200	Strong transcription	Fetal Intestine Large	intestine
19	chr10:27485000-27512400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:27485200-27512200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:27485200-27512400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:27485200-27512400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:27485200-27512600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr10:27485800-27505800	Strong transcription	Fetal Muscle Leg	muscle
25	chr10:27486600-27508800	Strong transcription	Fetal Intestine Small	intestine
26	chr10:27486600-27508800	Strong transcription	Fetal Stomach	stomach
27	chr10:27486600-27512200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:27487200-27512400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:27488000-27508800	Strong transcription	Fetal Muscle Trunk	muscle
30	chr10:27488400-27512400	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:27488600-27528600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:27488800-27507800	Weak transcription	Fetal Heart	heart
33	chr10:27489400-27504600	Strong transcription	Dnd41	blood
34	chr10:27489600-27512400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:27489800-27512200	Strong transcription	Adipose Nuclei	Adipose
36	chr10:27489800-27512400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:27489800-27512400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:27490000-27512400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:27490000-27512400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:27490000-27512600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:27490200-27506000	Strong transcription	Primary T cells from cord blood	blood
42	chr10:27490200-27512000	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:27490400-27504600	Strong transcription	Fetal Thymus	thymus
44	chr10:27490400-27508800	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr10:27490600-27509000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:27491200-27512400	Strong transcription	Placenta	Placenta
47	chr10:27491400-27512600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:27491600-27503800	Strong transcription	Ovary	ovary
49	chr10:27491600-27505600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:27491800-27527800	Weak transcription	Fetal Brain Male	brain

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