Variant report

Variant	rs11015513
Chromosome Location	chr10:27375601-27375602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27368701..27371697-chr10:27373369..27375918,2	K562	blood:

Variant related genes	Relation type
ENSG00000107890	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1002351	0.90[AMR][1000 genomes]
rs10159601	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10466100	0.90[AMR][1000 genomes]
rs10764681	0.81[AMR][1000 genomes]
rs10764682	0.81[AMR][1000 genomes]
rs10829175	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829179	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829182	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829187	0.81[AMR][1000 genomes]
rs10829189	0.81[AMR][1000 genomes]
rs10829196	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10829198	0.89[AMR][1000 genomes]
rs10829209	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs10829214	0.90[AMR][1000 genomes]
rs10829215	0.90[AMR][1000 genomes]
rs10829216	0.90[AMR][1000 genomes]
rs11015524	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11015544	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11015562	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11015584	1.00[CEU][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11015585	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11015599	0.83[YRI][hapmap]
rs11015602	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs11015607	0.90[AMR][1000 genomes]
rs11015610	0.90[AMR][1000 genomes]
rs11015611	0.90[AMR][1000 genomes]
rs11015612	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs11015614	0.90[AMR][1000 genomes]
rs11015615	0.90[AMR][1000 genomes]
rs11813084	0.90[AMR][1000 genomes]
rs11813101	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs11813776	0.90[AMR][1000 genomes]
rs11815019	0.90[AMR][1000 genomes]
rs11816716	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11816764	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs11816767	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs11818136	0.90[AMR][1000 genomes]
rs11818645	0.91[EUR][1000 genomes]
rs11818842	0.91[EUR][1000 genomes]
rs11818993	0.90[AMR][1000 genomes]
rs11819631	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12098587	0.90[AMR][1000 genomes]
rs12098618	0.90[AMR][1000 genomes]
rs12240963	0.90[AMR][1000 genomes]
rs12241350	0.90[AMR][1000 genomes]
rs12243607	0.90[AMR][1000 genomes]
rs12244182	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12246088	0.90[AMR][1000 genomes]
rs12246158	0.90[AMR][1000 genomes]
rs12247183	0.90[AMR][1000 genomes]
rs12251155	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12251316	0.90[AMR][1000 genomes]
rs12253696	0.90[AMR][1000 genomes]
rs12257786	0.90[AMR][1000 genomes]
rs12259138	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs12259499	0.90[AMR][1000 genomes]
rs12261094	0.90[AMR][1000 genomes]
rs12261617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262674	0.90[AMR][1000 genomes]
rs12263872	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12268796	0.90[AMR][1000 genomes]
rs1557163	0.90[AMR][1000 genomes]
rs1557164	0.90[AMR][1000 genomes]
rs1557165	0.90[AMR][1000 genomes]
rs1557166	0.90[AMR][1000 genomes]
rs16927640	0.90[AMR][1000 genomes]
rs16927646	0.90[AMR][1000 genomes]
rs2297148	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34037342	0.90[AMR][1000 genomes]
rs34613194	0.90[AMR][1000 genomes]
rs34856168	0.90[AMR][1000 genomes]
rs41299210	0.91[EUR][1000 genomes]
rs57096075	0.90[AMR][1000 genomes]
rs57320669	1.00[AMR][1000 genomes]
rs57470366	0.90[AMR][1000 genomes]
rs57704178	0.90[AMR][1000 genomes]
rs58326983	0.90[AMR][1000 genomes]
rs58843203	0.90[AMR][1000 genomes]
rs59116633	0.90[AMR][1000 genomes]
rs59638069	0.90[AMR][1000 genomes]
rs61082197	1.00[AMR][1000 genomes]
rs61125165	0.90[AMR][1000 genomes]
rs61686723	0.90[AMR][1000 genomes]
rs6482599	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482605	0.90[AMR][1000 genomes]
rs6482606	0.90[AMR][1000 genomes]
rs6482609	0.90[AMR][1000 genomes]
rs6482610	0.90[AMR][1000 genomes]
rs6482611	0.90[AMR][1000 genomes]
rs6482612	0.90[AMR][1000 genomes]
rs7068463	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs7072412	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs7074120	0.90[AMR][1000 genomes]
rs7084392	0.90[AMR][1000 genomes]
rs7084515	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs7085266	0.90[AMR][1000 genomes]
rs7086946	0.81[YRI][hapmap]
rs7090639	0.90[AMR][1000 genomes]
rs7358044	0.90[AMR][1000 genomes]
rs7358057	0.90[AMR][1000 genomes]
rs74126939	0.90[AMR][1000 genomes]
rs7900802	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs7902900	0.90[AMR][1000 genomes]
rs7906528	0.90[AMR][1000 genomes]
rs7907326	0.90[AMR][1000 genomes]
rs7908434	0.81[AMR][1000 genomes]
rs7909359	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs7910142	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs7920178	0.81[AMR][1000 genomes]
rs7923708	0.90[AMR][1000 genomes]
rs7923846	0.90[AMR][1000 genomes]
rs9731310	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9971103	0.86[EUR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:27328000-27388200	Weak transcription	K562	blood
10	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
11	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
12	chr10:27341400-27376600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:27350200-27387800	Weak transcription	HMEC	breast
14	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:27361600-27388200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr10:27362200-27388400	Weak transcription	Colonic Mucosa	Colon
21	chr10:27362400-27376200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:27362400-27377200	Weak transcription	Hela-S3	cervix
23	chr10:27362400-27388000	Weak transcription	Right Ventricle	heart
24	chr10:27362400-27388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr10:27362400-27388400	Weak transcription	Pancreas	Pancrea
26	chr10:27362600-27376600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:27362600-27376600	Weak transcription	Ovary	ovary
28	chr10:27362600-27376600	Weak transcription	Thymus	Thymus
29	chr10:27362600-27376800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:27362600-27377600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:27362600-27377800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:27362600-27388400	Weak transcription	Esophagus	oesophagus
33	chr10:27362600-27388400	Weak transcription	Spleen	Spleen
34	chr10:27362600-27388800	Weak transcription	Gastric	stomach
35	chr10:27362800-27382200	Weak transcription	Brain Angular Gyrus	brain
36	chr10:27362800-27388600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:27363000-27378000	Weak transcription	Fetal Brain Male	brain
38	chr10:27363600-27377200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:27364800-27377200	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:27365000-27388000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:27366400-27376400	Weak transcription	HepG2	liver
42	chr10:27366400-27376600	Weak transcription	HUVEC	blood vessel
43	chr10:27366400-27377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:27366600-27376800	Weak transcription	NHLF	lung
45	chr10:27366600-27377200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:27366600-27381600	Weak transcription	HSMM	muscle
47	chr10:27366600-27382200	Weak transcription	NHEK	skin
48	chr10:27366600-27388000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:27366600-27388600	Weak transcription	Fetal Kidney	kidney
50	chr10:27366800-27380800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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