Variant report

Variant	rs10829182
Chromosome Location	chr10:27389776-27389777
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27388830-27389926	GM18505	blood:	n/a	n/a
2	TBP	chr10:27388918-27389776	K562	blood:	n/a	n/a
3	REST	chr10:27388594-27390095	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr10:27388800-27389869	GM12878	blood:	n/a	n/a
5	ZNF263	chr10:27388729-27389927	HEK293-T-REx	kidney:	n/a	n/a
6	POLR2A	chr10:27388791-27389854	H1-neurons	neurons:	n/a	n/a
7	POLR2A	chr10:27388679-27389896	GM12878	blood:	n/a	n/a
8	ZKSCAN1	chr10:27389134-27389813	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr10:27388876-27389801	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr10:27388880-27389782	H1-neurons	neurons:	n/a	n/a
11	POLR2A	chr10:27388915-27389780	MCF-7	breast:	n/a	n/a
12	MXI1	chr10:27388917-27389925	GM12878	blood:	n/a	n/a
13	RFX5	chr10:27389680-27389903	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr10:27388727-27390507	HepG2	liver:	n/a	n/a
15	E2F6	chr10:27388912-27389801	H1-hESC	embryonic stem cell:	n/a	chr10:27389428-27389437 chr10:27389459-27389468 chr10:27389499-27389508
16	RELA	chr10:27388948-27389845	GM19099	blood:	n/a	n/a
17	EBF1	chr10:27388829-27389820	GM12878	blood:	n/a	chr10:27389353-27389364
18	STAT5A	chr10:27388727-27389787	GM12878	blood:	n/a	n/a
19	TEAD4	chr10:27388907-27390055	K562	blood:	n/a	n/a
20	MAX	chr10:27388921-27389850	A549	lung:	n/a	n/a
21	MAX	chr10:27388882-27389877	SK-N-SH	brain:	n/a	n/a
22	TCF12	chr10:27389014-27389935	ECC-1	luminal epithelium:	n/a	n/a
23	TBP	chr10:27389198-27389811	Hela-S3	cervix:	n/a	n/a
24	BACH1	chr10:27388930-27389912	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr10:27388847-27389936	U87	brain:	n/a	n/a
26	E2F6	chr10:27388871-27389935	K562	blood:	n/a	chr10:27389428-27389437 chr10:27389459-27389468 chr10:27389499-27389508
27	MTA3	chr10:27388706-27390017	GM12878	blood:	n/a	n/a
28	MAX	chr10:27388828-27389917	A549	lung:	n/a	n/a
29	POLR2A	chr10:27388875-27389930	U87	brain:	n/a	n/a
30	MAX	chr10:27388819-27389859	ECC-1	luminal epithelium:	n/a	n/a
31	SMC3	chr10:27389170-27389802	Hela-S3	cervix:	n/a	n/a
32	SIN3AK20	chr10:27389452-27389779	A549	lung:	n/a	n/a
33	TBP	chr10:27389133-27389924	GM12878	blood:	n/a	n/a
34	MAX	chr10:27388915-27389958	GM12878	blood:	n/a	n/a
35	REST	chr10:27389040-27389875	A549	lung:	n/a	n/a
36	RELA	chr10:27388753-27389915	GM15510	blood:	n/a	n/a
37	NRF1	chr10:27388782-27389982	SK-N-SH	brain:	n/a	chr10:27389429-27389438 chr10:27389458-27389469 chr10:27389458-27389472 chr10:27389427-27389436 chr10:27389495-27389509 chr10:27389424-27389438 chr10:27389498-27389509 chr10:27389427-27389438 chr10:27389460-27389469 chr10:27389498-27389507 chr10:27389427-27389441 chr10:27389458-27389469 chr10:27389498-27389509
38	ZBTB33	chr10:27389140-27389777	A549	lung:	n/a	n/a
39	POLR2A	chr10:27388866-27389876	HUVEC	blood vessel:	n/a	n/a
40	WRNIP1	chr10:27388976-27389983	GM12878	blood:	n/a	n/a
41	BHLHE40	chr10:27388892-27389947	K562	blood:	n/a	n/a
42	POLR2A	chr10:27388939-27389788	HCT-116	colon:	n/a	n/a
43	GTF2F1	chr10:27389163-27389800	H1-hESC	embryonic stem cell:	n/a	n/a
44	PML	chr10:27388818-27389783	MCF-7	breast:	n/a	chr10:27389276-27389284
45	POLR2A	chr10:27388844-27389942	GM18951	blood:	n/a	n/a
46	RCOR1	chr10:27388567-27390111	K562	blood:	n/a	n/a
47	NRF1	chr10:27388936-27389819	GM12878	blood:	n/a	chr10:27389429-27389438 chr10:27389458-27389469 chr10:27389458-27389472 chr10:27389427-27389436 chr10:27389495-27389509 chr10:27389424-27389438 chr10:27389498-27389509 chr10:27389427-27389438 chr10:27389460-27389469 chr10:27389498-27389507 chr10:27389427-27389441 chr10:27389458-27389469 chr10:27389498-27389509
48	POLR2A	chr10:27388836-27389785	GM19193	blood:	n/a	n/a
49	MXI1	chr10:27388139-27390299	SK-N-SH	brain:	n/a	n/a
50	PAX5	chr10:27388805-27389789	GM12878	blood:	n/a	chr10:27389459-27389468 chr10:27389639-27389656

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27389620..27391351-chr10:27392502..27395276,2	MCF-7	breast:
2	chr10:27387680..27390568-chr10:27529145..27530975,2	K562	blood:

Variant related genes	Relation type
ANKRD26	TF binding region
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10159601	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764681	1.00[AMR][1000 genomes]
rs10764682	1.00[AMR][1000 genomes]
rs10764687	0.91[AMR][1000 genomes]
rs10829175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829177	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829179	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829187	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829189	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829196	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015444	0.87[ASN][1000 genomes]
rs11015448	0.87[ASN][1000 genomes]
rs11015459	0.90[ASN][1000 genomes]
rs11015462	0.90[ASN][1000 genomes]
rs11015465	0.90[ASN][1000 genomes]
rs11015466	0.90[ASN][1000 genomes]
rs11015470	0.90[ASN][1000 genomes]
rs11015471	0.90[ASN][1000 genomes]
rs11015476	0.90[ASN][1000 genomes]
rs11015478	0.90[ASN][1000 genomes]
rs11015479	0.92[ASN][1000 genomes]
rs11015483	0.90[ASN][1000 genomes]
rs11015490	0.85[ASN][1000 genomes]
rs11015491	0.90[ASN][1000 genomes]
rs11015492	0.89[ASN][1000 genomes]
rs11015493	0.90[ASN][1000 genomes]
rs11015494	0.90[ASN][1000 genomes]
rs11015495	0.90[ASN][1000 genomes]
rs11015496	0.90[ASN][1000 genomes]
rs11015497	0.90[ASN][1000 genomes]
rs11015498	0.90[ASN][1000 genomes]
rs11015499	0.90[ASN][1000 genomes]
rs11015500	0.90[ASN][1000 genomes]
rs11015501	0.90[ASN][1000 genomes]
rs11015502	0.92[ASN][1000 genomes]
rs11015507	0.97[ASN][1000 genomes]
rs11015513	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11015524	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015544	0.81[AMR][1000 genomes]
rs11015562	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015584	0.81[AMR][1000 genomes]
rs11819631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244182	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12250059	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261617	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12263872	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266594	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354715	0.89[ASN][1000 genomes]
rs12355227	0.87[ASN][1000 genomes]
rs12355949	0.87[ASN][1000 genomes]
rs12357873	0.92[ASN][1000 genomes]
rs12358854	0.90[ASN][1000 genomes]
rs12359281	0.92[ASN][1000 genomes]
rs2274742	0.87[ASN][1000 genomes]
rs2275751	0.86[ASN][1000 genomes]
rs2297148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780923	0.86[ASN][1000 genomes]
rs3781097	0.87[ASN][1000 genomes]
rs3824692	0.92[ASN][1000 genomes]
rs4747582	0.92[ASN][1000 genomes]
rs4749220	0.90[ASN][1000 genomes]
rs57320669	0.81[AMR][1000 genomes]
rs61081993	0.87[ASN][1000 genomes]
rs61082197	0.81[AMR][1000 genomes]
rs61216393	0.88[ASN][1000 genomes]
rs6482590	0.90[ASN][1000 genomes]
rs6482599	0.81[AMR][1000 genomes]
rs7080104	0.90[ASN][1000 genomes]
rs7083360	0.90[ASN][1000 genomes]
rs7083739	0.90[ASN][1000 genomes]
rs7086946	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096070	0.87[ASN][1000 genomes]
rs7897698	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920178	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9651377	0.98[ASN][1000 genomes]
rs9731310	0.81[AMR][1000 genomes]
rs9731878	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364452	chr10:27385286-27395686	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3369347	chr10:27385331-27395478	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10829182	YME1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27388000-27390000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:27388000-27390000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:27388200-27389800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:27388200-27389800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:27388200-27390000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:27388200-27390000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr10:27388200-27390000	Active TSS	A549	lung
8	chr10:27388200-27390000	Active TSS	NHDF-Ad	bronchial
9	chr10:27388200-27390200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr10:27388200-27390400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:27388200-27390400	Active TSS	Colon Smooth Muscle	Colon
12	chr10:27388400-27389800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr10:27388400-27389800	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr10:27388400-27389800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:27388400-27389800	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr10:27388400-27389800	Active TSS	Fetal Brain Female	brain
17	chr10:27388400-27389800	Active TSS	Placenta Amnion	Placenta Amnion
18	chr10:27388400-27389800	Active TSS	NH-A	brain
19	chr10:27388400-27390000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:27388400-27390000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:27388400-27390000	Active TSS	Brain Germinal Matrix	brain
22	chr10:27388400-27390000	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr10:27388400-27390000	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr10:27388400-27390200	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr10:27388400-27390200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:27388400-27390200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:27388400-27390200	Active TSS	Ovary	ovary
28	chr10:27388400-27390400	Active TSS	Rectal Smooth Muscle	rectum
29	chr10:27388600-27389800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:27388600-27389800	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr10:27388600-27389800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:27388600-27389800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:27388600-27389800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:27388600-27389800	Active TSS	Duodenum Mucosa	Duodenum
35	chr10:27388600-27389800	Active TSS	Fetal Kidney	kidney
36	chr10:27388600-27389800	Active TSS	HSMMtube	muscle
37	chr10:27388600-27389800	Active TSS	Osteobl	bone
38	chr10:27388600-27390000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr10:27388600-27390000	Active TSS	H1 Cell Line	embryonic stem cell
40	chr10:27388600-27390000	Active TSS	H9 Cell Line	embryonic stem cell
41	chr10:27388600-27390000	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr10:27388600-27390000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:27388600-27390000	Active TSS	Aorta	Aorta
44	chr10:27388600-27390000	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr10:27388600-27390000	Active TSS	Esophagus	oesophagus
46	chr10:27388600-27390000	Active TSS	Fetal Intestine Large	intestine
47	chr10:27388600-27390000	Active TSS	Fetal Intestine Small	intestine
48	chr10:27388600-27390000	Active TSS	Fetal Stomach	stomach
49	chr10:27388600-27390000	Active TSS	Right Ventricle	heart
50	chr10:27388600-27390000	Active TSS	Small Intestine	intestine

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