Variant report

Variant	rs3780923
Chromosome Location	chr10:27424283-27424284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27420918..27424983-chr10:27426068..27428303,5	K562	blood:
2	chr10:27422874..27425974-chr10:27441725..27444427,3	K562	blood:
3	chr10:27422273..27425391-chr10:27529619..27533685,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107897	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 151 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs1002351	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10159601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10466100	0.88[ASN][1000 genomes]
rs10764681	0.93[ASN][1000 genomes]
rs10764682	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10764687	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10829175	0.86[ASN][1000 genomes]
rs10829177	0.86[ASN][1000 genomes]
rs10829179	0.86[ASN][1000 genomes]
rs10829182	0.86[ASN][1000 genomes]
rs10829187	0.97[ASN][1000 genomes]
rs10829189	0.97[ASN][1000 genomes]
rs10829196	1.00[ASN][1000 genomes]
rs10829209	0.91[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10829214	0.85[ASN][1000 genomes]
rs10829215	0.85[ASN][1000 genomes]
rs10829216	0.85[ASN][1000 genomes]
rs11015448	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11015459	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11015479	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11015492	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11015495	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11015498	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11015501	0.88[JPT][hapmap]
rs11015502	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11015507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11015524	0.86[ASN][1000 genomes]
rs11015562	1.00[ASN][1000 genomes]
rs11015602	1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015607	0.88[ASN][1000 genomes]
rs11015608	0.88[ASN][1000 genomes]
rs11015609	0.88[ASN][1000 genomes]
rs11015610	0.88[ASN][1000 genomes]
rs11015611	0.88[ASN][1000 genomes]
rs11015612	0.91[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11015614	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11015615	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11813084	0.88[ASN][1000 genomes]
rs11813101	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs11816764	0.91[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11816767	0.88[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11818136	0.88[ASN][1000 genomes]
rs11819631	0.86[ASN][1000 genomes]
rs12098587	0.85[ASN][1000 genomes]
rs12098618	0.85[ASN][1000 genomes]
rs12240963	0.81[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12241350	0.88[ASN][1000 genomes]
rs12243607	0.81[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs12244182	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12246088	0.88[ASN][1000 genomes]
rs12246158	0.88[ASN][1000 genomes]
rs12247183	0.88[ASN][1000 genomes]
rs12250059	0.86[ASN][1000 genomes]
rs12251316	0.81[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs12253696	0.85[ASN][1000 genomes]
rs12257786	0.81[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs12259138	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs12259499	0.81[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs12261094	0.85[ASN][1000 genomes]
rs12262674	0.85[ASN][1000 genomes]
rs12263872	0.86[ASN][1000 genomes]
rs12266594	0.86[ASN][1000 genomes]
rs12268796	0.85[ASN][1000 genomes]
rs12354715	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12359281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1557163	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1557164	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1557165	0.85[ASN][1000 genomes]
rs1557166	0.81[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs16927640	0.88[ASN][1000 genomes]
rs16927646	0.85[ASN][1000 genomes]
rs2274742	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2275751	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297148	0.86[ASN][1000 genomes]
rs34037342	0.88[ASN][1000 genomes]
rs34613194	0.88[ASN][1000 genomes]
rs34856168	0.88[ASN][1000 genomes]
rs36121140	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3818962	0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs3818965	1.00[EUR][1000 genomes]
rs3818968	0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs3824594	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3824692	1.00[EUR][1000 genomes]
rs41314978	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4747582	1.00[EUR][1000 genomes]
rs4749220	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs55872244	1.00[EUR][1000 genomes]
rs55884764	1.00[EUR][1000 genomes]
rs57096075	0.88[ASN][1000 genomes]
rs57470366	0.88[ASN][1000 genomes]
rs57704178	0.88[ASN][1000 genomes]
rs58326983	0.88[ASN][1000 genomes]
rs58649395	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58843203	0.88[ASN][1000 genomes]
rs59116633	0.88[ASN][1000 genomes]
rs59638069	0.88[ASN][1000 genomes]
rs59935135	1.00[EUR][1000 genomes]
rs61216393	1.00[EUR][1000 genomes]
rs61686723	0.85[ASN][1000 genomes]
rs6482590	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6482605	0.88[ASN][1000 genomes]
rs6482606	0.88[ASN][1000 genomes]
rs6482609	0.85[ASN][1000 genomes]
rs6482610	0.85[ASN][1000 genomes]
rs6482611	0.85[ASN][1000 genomes]
rs6482612	0.81[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7068182	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7068463	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7069127	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7069761	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7072412	0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7074120	0.88[ASN][1000 genomes]
rs7080104	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7083739	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7084392	0.88[ASN][1000 genomes]
rs7084515	0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7085266	0.88[ASN][1000 genomes]
rs7086946	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7087198	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs7090639	0.88[ASN][1000 genomes]
rs7358044	0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7358057	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs74126939	0.88[ASN][1000 genomes]
rs74126942	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74126943	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74126946	1.00[EUR][1000 genomes]
rs74126948	1.00[EUR][1000 genomes]
rs7897124	0.81[ASN][1000 genomes]
rs7897698	0.86[ASN][1000 genomes]
rs7898083	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7898338	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7898820	1.00[EUR][1000 genomes]
rs7900802	0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7902900	0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7903450	0.85[ASN][1000 genomes]
rs7904576	0.80[ASN][1000 genomes]
rs7906528	0.81[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7907326	0.85[ASN][1000 genomes]
rs7908050	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7908434	0.85[ASN][1000 genomes]
rs7909359	0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7910142	0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7912056	1.00[EUR][1000 genomes]
rs7913638	1.00[EUR][1000 genomes]
rs7914017	1.00[EUR][1000 genomes]
rs7920178	0.93[ASN][1000 genomes]
rs7920608	0.86[ASN][1000 genomes]
rs7923708	0.88[ASN][1000 genomes]
rs7923846	0.88[ASN][1000 genomes]
rs9299840	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs9651377	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:27396200-27425400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:27396600-27425400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:27397000-27425600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
15	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:27398600-27425000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr10:27398600-27425200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:27398600-27425200	Strong transcription	Fetal Intestine Large	intestine
21	chr10:27398600-27425400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr10:27398600-27426400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr10:27398600-27427000	Strong transcription	GM12878-XiMat	blood
24	chr10:27398600-27427800	Strong transcription	Adipose Nuclei	Adipose
25	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:27398600-27436400	Strong transcription	Dnd41	blood
30	chr10:27398800-27425400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:27398800-27426000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:27398800-27427600	Strong transcription	Fetal Lung	lung
33	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:27399000-27426400	Strong transcription	Osteobl	bone
36	chr10:27399000-27426800	Strong transcription	Primary B cells from peripheral blood	blood
37	chr10:27399000-27431400	Strong transcription	Placenta	Placenta
38	chr10:27399200-27424800	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:27399200-27425400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:27400000-27426000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:27400400-27438400	Strong transcription	Liver	Liver
45	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:27401400-27425000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr10:27403000-27428400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:27403200-27431600	Strong transcription	NH-A	brain
49	chr10:27403600-27425200	Strong transcription	HepG2	liver
50	chr10:27405800-27427600	Strong transcription	HSMM	muscle

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