Variant report

Variant	rs55884764
Chromosome Location	chr10:27532739-27532740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27529059-27532978	MCF-7	breast:	n/a	n/a
2	MTA3	chr10:27529032-27532977	GM12878	blood:	n/a	n/a
3	MXI1	chr10:27528804-27533681	SK-N-SH	brain:	n/a	n/a
4	ESR1	chr10:27532709-27532961	T-47D	breast:	n/a	n/a
5	ESR1	chr10:27532623-27533061	T-47D	breast:	n/a	n/a
6	POLR2A	chr10:27529181-27532999	GM12878	blood:	n/a	n/a
7	POLR2A	chr10:27529100-27533158	GM12891	blood:	n/a	n/a
8	RELA	chr10:27531710-27532760	GM10847	blood:	n/a	n/a
9	RELA	chr10:27531702-27533024	GM15510	blood:	n/a	n/a
10	RELA	chr10:27531738-27532812	GM18505	blood:	n/a	n/a
11	GABPA	chr10:27529143-27532848	MCF-7	breast:	n/a	n/a
12	MAX	chr10:27531699-27532782	A549	lung:	n/a	n/a
13	POLR2A	chr10:27529122-27532964	GM18505	blood:	n/a	n/a
14	ZNF263	chr10:27530786-27532931	HEK293-T-REx	kidney:	n/a	chr10:27531183-27531192 chr10:27531949-27531970 chr10:27531994-27532015
15	BHLHE40	chr10:27531757-27532806	K562	blood:	n/a	n/a
16	POLR2A	chr10:27532671-27532898	HepG2	liver:	n/a	n/a
17	ESR1	chr10:27532727-27533004	T-47D	breast:	n/a	n/a
18	ESR1	chr10:27532637-27533066	T-47D	breast:	n/a	n/a
19	POLR2A	chr10:27531728-27532849	K562	blood:	n/a	n/a
20	ESR1	chr10:27532620-27533028	T-47D	breast:	n/a	n/a
21	RFX5	chr10:27532709-27532875	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:27532717-27533080	SK-N-SH	brain:	n/a	n/a
23	POLR2A	chr10:27530573-27532788	GM12892	blood:	n/a	n/a
24	POLR2A	chr10:27529128-27533001	GM12892	blood:	n/a	n/a
25	POLR2A	chr10:27529120-27533024	GM12892	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:27529521..27534854-chr10:27538591..27544292,11	K562	blood:
2	chr10:6242075..6244740-chr10:27530620..27532882,2	MCF-7	breast:
3	chr10:27442535..27445982-chr10:27528407..27534290,13	K562	blood:
4	chr10:27422273..27425391-chr10:27529619..27533685,5	MCF-7	breast:
5	chr10:27442176..27446829-chr10:27524472..27534671,19	K562	blood:

No data

Variant related genes	Relation type
ACBD5	TF binding region
ENSG00000136758	Chromatin interaction
ENSG00000230445	Chromatin interaction
ENSG00000213994	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1002351	0.89[ASN][1000 genomes]
rs10466100	0.86[ASN][1000 genomes]
rs10764681	0.81[ASN][1000 genomes]
rs10764682	0.81[ASN][1000 genomes]
rs10764687	0.81[ASN][1000 genomes]
rs10829209	0.86[ASN][1000 genomes]
rs10829214	0.89[ASN][1000 genomes]
rs10829215	0.89[ASN][1000 genomes]
rs10829216	0.89[ASN][1000 genomes]
rs11015602	0.84[ASN][1000 genomes]
rs11015607	0.86[ASN][1000 genomes]
rs11015608	0.86[ASN][1000 genomes]
rs11015609	0.86[ASN][1000 genomes]
rs11015610	0.86[ASN][1000 genomes]
rs11015611	0.86[ASN][1000 genomes]
rs11015612	0.86[ASN][1000 genomes]
rs11015614	0.89[ASN][1000 genomes]
rs11015615	0.89[ASN][1000 genomes]
rs11813084	0.86[ASN][1000 genomes]
rs11813101	0.86[ASN][1000 genomes]
rs11816764	0.86[ASN][1000 genomes]
rs11816767	0.86[ASN][1000 genomes]
rs11818136	0.86[ASN][1000 genomes]
rs12098587	0.89[ASN][1000 genomes]
rs12098618	0.89[ASN][1000 genomes]
rs12240963	0.93[ASN][1000 genomes]
rs12241350	0.86[ASN][1000 genomes]
rs12243607	0.89[ASN][1000 genomes]
rs12246088	0.86[ASN][1000 genomes]
rs12246158	0.86[ASN][1000 genomes]
rs12247183	0.86[ASN][1000 genomes]
rs12251316	0.89[ASN][1000 genomes]
rs12253696	0.82[ASN][1000 genomes]
rs12257786	0.89[ASN][1000 genomes]
rs12259138	0.86[ASN][1000 genomes]
rs12259499	0.89[ASN][1000 genomes]
rs12261094	0.89[ASN][1000 genomes]
rs12262674	0.89[ASN][1000 genomes]
rs12268796	0.82[ASN][1000 genomes]
rs1557163	0.89[ASN][1000 genomes]
rs1557164	0.89[ASN][1000 genomes]
rs1557165	0.89[ASN][1000 genomes]
rs1557166	0.89[ASN][1000 genomes]
rs16927640	0.86[ASN][1000 genomes]
rs16927646	0.89[ASN][1000 genomes]
rs2275751	1.00[EUR][1000 genomes]
rs34037342	0.86[ASN][1000 genomes]
rs34613194	0.86[ASN][1000 genomes]
rs34856168	0.86[ASN][1000 genomes]
rs36121140	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3780923	1.00[EUR][1000 genomes]
rs3818962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824594	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs41314978	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55872244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56710909	0.85[ASN][1000 genomes]
rs56787693	0.89[ASN][1000 genomes]
rs57096075	0.86[ASN][1000 genomes]
rs57470366	0.86[ASN][1000 genomes]
rs57563582	0.91[ASN][1000 genomes]
rs57704178	0.86[ASN][1000 genomes]
rs58326983	0.86[ASN][1000 genomes]
rs58649395	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58843203	0.86[ASN][1000 genomes]
rs59116633	0.86[ASN][1000 genomes]
rs59638069	0.86[ASN][1000 genomes]
rs59935135	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59947739	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61607571	0.89[ASN][1000 genomes]
rs61686723	0.89[ASN][1000 genomes]
rs61737707	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61737928	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6482605	0.86[ASN][1000 genomes]
rs6482606	0.86[ASN][1000 genomes]
rs6482609	0.89[ASN][1000 genomes]
rs6482610	0.89[ASN][1000 genomes]
rs6482611	0.89[ASN][1000 genomes]
rs6482612	0.89[ASN][1000 genomes]
rs7068182	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7068463	0.86[ASN][1000 genomes]
rs7069127	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7069761	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7070377	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7070508	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7072412	0.86[ASN][1000 genomes]
rs7074120	0.86[ASN][1000 genomes]
rs7084392	0.86[ASN][1000 genomes]
rs7084515	0.86[ASN][1000 genomes]
rs7085266	0.86[ASN][1000 genomes]
rs7087198	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7090639	0.86[ASN][1000 genomes]
rs7091897	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7092591	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7092612	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7358044	0.89[ASN][1000 genomes]
rs7358057	0.89[ASN][1000 genomes]
rs74126939	0.86[ASN][1000 genomes]
rs74126942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74126943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74126946	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74126948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7897124	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7898083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7898338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7898820	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7900802	0.86[ASN][1000 genomes]
rs7902900	0.87[ASN][1000 genomes]
rs7903450	0.82[ASN][1000 genomes]
rs7906528	0.89[ASN][1000 genomes]
rs7907326	0.89[ASN][1000 genomes]
rs7908434	0.89[ASN][1000 genomes]
rs7909359	0.86[ASN][1000 genomes]
rs7910142	0.86[ASN][1000 genomes]
rs7912056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913638	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920178	0.81[ASN][1000 genomes]
rs7920608	0.80[ASN][1000 genomes]
rs7923708	0.86[ASN][1000 genomes]
rs7923846	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27528200-27532800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr10:27528400-27533000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr10:27528400-27533000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr10:27528600-27532800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:27531000-27532800	Active TSS	Stomach Smooth Muscle	stomach
6	chr10:27531400-27532800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:27531400-27532800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:27531600-27532800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:27531800-27532800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr10:27531800-27532800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr10:27531800-27532800	Flanking Active TSS	NHLF	lung
12	chr10:27531800-27533000	Flanking Active TSS	HMEC	breast
13	chr10:27532000-27532800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:27532000-27532800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
15	chr10:27532000-27532800	Flanking Active TSS	Fetal Brain Male	brain
16	chr10:27532000-27532800	Flanking Active TSS	Fetal Lung	lung
17	chr10:27532000-27532800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr10:27532000-27532800	Flanking Active TSS	NHEK	skin
19	chr10:27532000-27533000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:27532000-27533000	Flanking Active TSS	NH-A	brain
21	chr10:27532000-27533200	Flanking Active TSS	Dnd41	blood
22	chr10:27532200-27532800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:27532200-27532800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:27532200-27532800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr10:27532200-27532800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr10:27532200-27532800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:27532200-27532800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:27532200-27532800	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr10:27532200-27532800	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr10:27532200-27532800	Flanking Active TSS	Brain Substantia Nigra	brain
31	chr10:27532200-27532800	Flanking Active TSS	GM12878-XiMat	blood
32	chr10:27532200-27532800	Flanking Active TSS	Hela-S3	cervix
33	chr10:27532200-27532800	Flanking Active TSS	HSMMtube	muscle
34	chr10:27532200-27533000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr10:27532200-27533000	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr10:27532200-27533000	Flanking Active TSS	A549	lung
37	chr10:27532200-27533000	Flanking Active TSS	HepG2	liver
38	chr10:27532200-27533000	Flanking Active TSS	NHDF-Ad	bronchial
39	chr10:27532200-27533200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:27532400-27532800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr10:27532400-27532800	Flanking Active TSS	H9 Cell Line	embryonic stem cell
42	chr10:27532400-27532800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr10:27532400-27532800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr10:27532400-27532800	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr10:27532400-27532800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr10:27532400-27532800	Flanking Active TSS	Fetal Brain Female	brain
47	chr10:27532400-27532800	Flanking Active TSS	Fetal Kidney	kidney
48	chr10:27532400-27532800	Active TSS	Fetal Muscle Trunk	muscle
49	chr10:27532400-27532800	Enhancers	Placenta Amnion	Placenta Amnion
50	chr10:27532400-27532800	Enhancers	Sigmoid Colon	Sigmoid Colon

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