Variant report

Variant	rs56787693
Chromosome Location	chr10:27546146-27546147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr10:27545947-27546629	K562	blood:	n/a	n/a
2	NFYB	chr10:27546124-27546540	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:27540317..27543087-chr10:27544102..27547353,4	MCF-7	breast:
2	chr10:27443226..27445313-chr10:27544417..27546363,2	MCF-7	breast:
3	chr10:27541565..27543150-chr10:27544289..27546288,2	K562	blood:
4	chr10:27529693..27532535-chr10:27543299..27546375,3	MCF-7	breast:

Variant related genes	Relation type
ARMC4P1	TF binding region
ENSG00000107897	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction
ENSG00000230445	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1002351	0.82[ASN][1000 genomes]
rs10829214	0.82[ASN][1000 genomes]
rs10829215	0.82[ASN][1000 genomes]
rs10829216	0.82[ASN][1000 genomes]
rs11015614	0.82[ASN][1000 genomes]
rs11015615	0.82[ASN][1000 genomes]
rs12098587	0.82[ASN][1000 genomes]
rs12098618	0.82[ASN][1000 genomes]
rs12240963	0.86[ASN][1000 genomes]
rs12242378	0.89[ASN][1000 genomes]
rs12243607	0.82[ASN][1000 genomes]
rs12245098	0.89[ASN][1000 genomes]
rs12251316	0.82[ASN][1000 genomes]
rs12257786	0.82[ASN][1000 genomes]
rs12259499	0.82[ASN][1000 genomes]
rs12261094	0.82[ASN][1000 genomes]
rs12262674	0.82[ASN][1000 genomes]
rs1557163	0.82[ASN][1000 genomes]
rs1557164	0.82[ASN][1000 genomes]
rs1557165	0.82[ASN][1000 genomes]
rs1557166	0.82[ASN][1000 genomes]
rs16927646	0.82[ASN][1000 genomes]
rs3818962	0.89[ASN][1000 genomes]
rs3818965	0.89[ASN][1000 genomes]
rs3818968	0.89[ASN][1000 genomes]
rs55872244	0.89[ASN][1000 genomes]
rs55884764	0.89[ASN][1000 genomes]
rs56710909	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57095080	0.84[ASN][1000 genomes]
rs57563582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58199223	0.89[ASN][1000 genomes]
rs58229025	0.89[ASN][1000 genomes]
rs58452779	0.89[ASN][1000 genomes]
rs58818625	0.89[ASN][1000 genomes]
rs59001370	0.89[ASN][1000 genomes]
rs59935135	0.89[ASN][1000 genomes]
rs59947739	0.89[ASN][1000 genomes]
rs60224290	1.00[AMR][1000 genomes]
rs60603832	0.89[ASN][1000 genomes]
rs60636886	0.89[ASN][1000 genomes]
rs61249155	0.89[ASN][1000 genomes]
rs61607571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61644623	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61686723	0.82[ASN][1000 genomes]
rs61737707	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61737928	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6482609	0.82[ASN][1000 genomes]
rs6482610	0.82[ASN][1000 genomes]
rs6482611	0.82[ASN][1000 genomes]
rs6482612	0.82[ASN][1000 genomes]
rs7068182	0.86[ASN][1000 genomes]
rs7069127	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7069761	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7070377	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7070508	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7080784	0.84[ASN][1000 genomes]
rs7087198	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7091897	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7092591	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7092612	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7358044	0.82[ASN][1000 genomes]
rs7358057	0.82[ASN][1000 genomes]
rs74126942	0.86[ASN][1000 genomes]
rs74126943	0.86[ASN][1000 genomes]
rs74126946	0.89[ASN][1000 genomes]
rs74126948	0.84[ASN][1000 genomes]
rs7897124	0.86[ASN][1000 genomes]
rs7898083	0.86[ASN][1000 genomes]
rs7898338	0.86[ASN][1000 genomes]
rs7898820	0.89[ASN][1000 genomes]
rs7901682	0.89[ASN][1000 genomes]
rs7902900	0.81[ASN][1000 genomes]
rs7906528	0.82[ASN][1000 genomes]
rs7907326	0.82[ASN][1000 genomes]
rs7908050	0.89[ASN][1000 genomes]
rs7908434	0.82[ASN][1000 genomes]
rs7912056	0.89[ASN][1000 genomes]
rs7913638	0.89[ASN][1000 genomes]
rs7914017	0.89[ASN][1000 genomes]
rs9299840	0.89[ASN][1000 genomes]
rs9919348	0.89[ASN][1000 genomes]
rs9919361	0.89[ASN][1000 genomes]
rs9919373	0.89[ASN][1000 genomes]
rs9919432	0.89[ASN][1000 genomes]
rs9919455	0.89[ASN][1000 genomes]
rs9919481	0.89[ASN][1000 genomes]
rs9919495	0.89[ASN][1000 genomes]
rs9919506	0.89[ASN][1000 genomes]
rs9919514	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27538000-27547200	Weak transcription	Fetal Heart	heart
2	chr10:27541800-27546800	Weak transcription	HSMMtube	muscle
3	chr10:27542000-27547400	Weak transcription	Right Ventricle	heart
4	chr10:27542000-27547600	Weak transcription	Pancreas	Pancrea
5	chr10:27542400-27546200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:27542600-27546600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:27545200-27546200	ZNF genes & repeats	GM12878-XiMat	blood
8	chr10:27545800-27546400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr10:27545800-27546400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:27545800-27547000	Enhancers	Dnd41	blood

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