Variant report

Variant	rs7069127
Chromosome Location	chr10:27538735-27538736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27442115..27444569-chr10:27537853..27541412,3	K562	blood:
2	chr10:27529521..27534854-chr10:27538591..27544292,11	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACBD5-1	chr10:27534782-27541235	NR_003525

Variant related genes	Relation type
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1002351	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10159601	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10466100	0.80[ASN][1000 genomes]
rs10764682	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10764687	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10829209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10829214	0.84[ASN][1000 genomes]
rs10829215	0.84[ASN][1000 genomes]
rs10829216	0.84[ASN][1000 genomes]
rs11015492	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11015495	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11015498	0.88[JPT][hapmap]
rs11015502	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs11015507	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs11015602	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11015607	0.80[ASN][1000 genomes]
rs11015608	0.80[ASN][1000 genomes]
rs11015609	0.80[ASN][1000 genomes]
rs11015610	0.80[ASN][1000 genomes]
rs11015611	0.80[ASN][1000 genomes]
rs11015612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11015614	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11015615	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11813084	0.80[ASN][1000 genomes]
rs11813101	1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs11816764	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11816767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11818136	0.80[ASN][1000 genomes]
rs12098587	0.84[ASN][1000 genomes]
rs12098618	0.84[ASN][1000 genomes]
rs12240963	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12241350	0.80[ASN][1000 genomes]
rs12242378	0.84[ASN][1000 genomes]
rs12243607	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12244182	1.00[JPT][hapmap]
rs12245098	0.84[ASN][1000 genomes]
rs12246088	0.80[ASN][1000 genomes]
rs12246158	0.80[ASN][1000 genomes]
rs12247183	0.80[ASN][1000 genomes]
rs12251316	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12257786	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12259138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12259499	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12261094	0.84[ASN][1000 genomes]
rs12262674	0.84[ASN][1000 genomes]
rs12354715	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12359281	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs1557163	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1557164	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1557165	0.84[ASN][1000 genomes]
rs1557166	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16927640	0.80[ASN][1000 genomes]
rs16927646	0.84[ASN][1000 genomes]
rs2275751	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs34037342	0.80[ASN][1000 genomes]
rs34613194	0.80[ASN][1000 genomes]
rs34856168	0.80[ASN][1000 genomes]
rs3780923	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs3818962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3818965	0.94[ASN][1000 genomes]
rs3818968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs41314978	0.80[ASN][1000 genomes]
rs4749220	1.00[JPT][hapmap]
rs55872244	0.94[ASN][1000 genomes]
rs55884764	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs56710909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56787693	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57096075	0.80[ASN][1000 genomes]
rs57470366	0.80[ASN][1000 genomes]
rs57563582	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57704178	0.80[ASN][1000 genomes]
rs58199223	0.84[ASN][1000 genomes]
rs58229025	0.84[ASN][1000 genomes]
rs58326983	0.80[ASN][1000 genomes]
rs58452779	0.84[ASN][1000 genomes]
rs58818625	0.84[ASN][1000 genomes]
rs58843203	0.80[ASN][1000 genomes]
rs59001370	0.84[ASN][1000 genomes]
rs59116633	0.80[ASN][1000 genomes]
rs59638069	0.80[ASN][1000 genomes]
rs59935135	0.94[ASN][1000 genomes]
rs59947739	0.94[ASN][1000 genomes]
rs60603832	0.84[ASN][1000 genomes]
rs60636886	0.84[ASN][1000 genomes]
rs61249155	0.84[ASN][1000 genomes]
rs61607571	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61644623	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61686723	0.84[ASN][1000 genomes]
rs61737707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61737928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482605	0.80[ASN][1000 genomes]
rs6482606	0.80[ASN][1000 genomes]
rs6482609	0.84[ASN][1000 genomes]
rs6482610	0.84[ASN][1000 genomes]
rs6482611	0.84[ASN][1000 genomes]
rs6482612	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7068182	0.87[ASN][1000 genomes]
rs7068463	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7069761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7074120	0.80[ASN][1000 genomes]
rs7080104	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7083739	0.88[JPT][hapmap]
rs7084392	0.80[ASN][1000 genomes]
rs7084515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7085266	0.80[ASN][1000 genomes]
rs7086946	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7087198	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7090639	0.80[ASN][1000 genomes]
rs7091897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7358057	0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs74126939	0.80[ASN][1000 genomes]
rs74126942	0.87[ASN][1000 genomes]
rs74126943	0.87[ASN][1000 genomes]
rs74126946	0.94[ASN][1000 genomes]
rs74126948	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7897124	0.87[ASN][1000 genomes]
rs7898083	0.87[ASN][1000 genomes]
rs7898338	0.87[ASN][1000 genomes]
rs7898820	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7900802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7901682	0.84[ASN][1000 genomes]
rs7902900	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7906528	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7907326	0.84[ASN][1000 genomes]
rs7908050	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7908434	0.84[ASN][1000 genomes]
rs7909359	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7910142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7912056	0.94[ASN][1000 genomes]
rs7913638	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7914017	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7923708	0.80[ASN][1000 genomes]
rs7923846	0.80[ASN][1000 genomes]
rs9299840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9651377	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs9919348	0.84[ASN][1000 genomes]
rs9919361	0.84[ASN][1000 genomes]
rs9919373	0.84[ASN][1000 genomes]
rs9919432	0.84[ASN][1000 genomes]
rs9919455	0.84[ASN][1000 genomes]
rs9919481	0.84[ASN][1000 genomes]
rs9919495	0.84[ASN][1000 genomes]
rs9919506	0.84[ASN][1000 genomes]
rs9919514	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv947786	chr10:27535141-27541912	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27532600-27540400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:27532600-27541200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:27532600-27541200	Weak transcription	Esophagus	oesophagus
4	chr10:27532600-27541200	Weak transcription	Pancreas	Pancrea
5	chr10:27532600-27541200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:27532800-27541000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:27532800-27541000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:27532800-27541200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:27532800-27541200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:27532800-27541200	Weak transcription	Right Ventricle	heart
11	chr10:27533000-27541000	Weak transcription	Hela-S3	cervix
12	chr10:27533000-27541200	Weak transcription	Primary T cells from cord blood	blood
13	chr10:27533000-27541200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:27533000-27541200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:27533000-27541200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:27533000-27541200	Weak transcription	Brain Substantia Nigra	brain
17	chr10:27533000-27541200	Weak transcription	Fetal Kidney	kidney
18	chr10:27536400-27541200	Weak transcription	Fetal Intestine Large	intestine
19	chr10:27536400-27541200	Weak transcription	Fetal Intestine Small	intestine
20	chr10:27537200-27541200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:27537200-27541200	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:27537200-27541200	Weak transcription	Right Atrium	heart
23	chr10:27537200-27541400	Weak transcription	Psoas Muscle	Psoas
24	chr10:27538000-27541200	Weak transcription	Left Ventricle	heart
25	chr10:27538000-27541200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:27538000-27547200	Weak transcription	Fetal Heart	heart
27	chr10:27538200-27541000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:27538400-27539600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links