Variant report

Variant	rs11015495
Chromosome Location	chr10:27349562-27349563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27348919..27351268-chr10:27352657..27355523,2	K562	blood:
2	chr10:27324943..27326466-chr10:27346953..27349698,2	K562	blood:

Extended variants
information (count: 119 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs1002351	0.86[JPT][hapmap]
rs10159601	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10764682	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10764687	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs10829158	1.00[CEU][hapmap];0.80[MKK][hapmap]
rs10829170	0.84[EUR][1000 genomes]
rs10829171	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10829175	0.90[ASN][1000 genomes]
rs10829177	0.90[ASN][1000 genomes]
rs10829179	0.90[ASN][1000 genomes]
rs10829182	0.90[ASN][1000 genomes]
rs10829187	0.81[ASN][1000 genomes]
rs10829189	0.81[ASN][1000 genomes]
rs10829209	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs11015444	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015445	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11015448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015462	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015465	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015466	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015468	0.82[AMR][1000 genomes]
rs11015470	1.00[ASN][1000 genomes]
rs11015471	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015474	0.82[AMR][1000 genomes]
rs11015476	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015477	0.82[AMR][1000 genomes]
rs11015478	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015479	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[ASN][1000 genomes]
rs11015482	0.84[EUR][1000 genomes]
rs11015483	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015487	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11015490	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015493	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015500	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015501	0.82[CEU][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015502	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015507	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11015524	0.90[ASN][1000 genomes]
rs11015602	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs11015603	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs11015612	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11015614	0.88[JPT][hapmap]
rs11015615	0.86[JPT][hapmap]
rs11813101	0.81[CHB][hapmap]
rs11816764	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs11819631	0.90[ASN][1000 genomes]
rs12240963	0.88[JPT][hapmap]
rs12243607	0.88[JPT][hapmap]
rs12244182	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12250059	0.90[ASN][1000 genomes]
rs12251316	0.88[JPT][hapmap]
rs12257786	0.88[JPT][hapmap]
rs12259138	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs12259499	0.88[JPT][hapmap]
rs12263872	0.90[ASN][1000 genomes]
rs12266594	0.90[ASN][1000 genomes]
rs12354715	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12354840	1.00[CEU][hapmap]
rs12355227	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12355949	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12356360	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12357873	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12358854	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359281	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12569476	0.82[AMR][1000 genomes]
rs1557163	0.88[JPT][hapmap]
rs1557164	0.88[JPT][hapmap]
rs1557166	0.88[JPT][hapmap]
rs1854646	0.84[EUR][1000 genomes]
rs2274742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275751	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2297148	0.90[ASN][1000 genomes]
rs3780923	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3781097	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3781098	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3818962	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs3818968	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs3824692	0.98[ASN][1000 genomes]
rs4747582	0.98[ASN][1000 genomes]
rs4747583	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4749220	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56907673	0.84[EUR][1000 genomes]
rs60521923	0.84[EUR][1000 genomes]
rs61081993	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61216393	0.95[ASN][1000 genomes]
rs6482590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482612	0.88[JPT][hapmap]
rs7068463	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7069127	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7069761	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7072412	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7080104	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083360	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084515	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7086946	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7087198	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7096070	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7358044	0.86[JPT][hapmap]
rs7358057	0.88[JPT][hapmap]
rs7897698	0.90[ASN][1000 genomes]
rs7900343	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes]
rs7900802	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7902900	0.88[JPT][hapmap]
rs7906528	0.88[JPT][hapmap]
rs7907257	0.82[AMR][1000 genomes]
rs7909359	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs7910142	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs9651377	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9731878	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11015495	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs11015495	MASTL	cis	multi-tissue	Pritchard
rs11015495	MASTL	cis	lung	GTEx
rs11015495	MASTL	cis	Thyroid	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
4	chr10:27288800-27357000	Weak transcription	Gastric	stomach
5	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
7	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
9	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
10	chr10:27291400-27360600	Weak transcription	Lung	lung
11	chr10:27291600-27351000	Weak transcription	NHLF	lung
12	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
13	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
14	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
16	chr10:27312800-27358200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:27313200-27363400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:27317400-27351800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:27318200-27357400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:27318400-27350600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr10:27319000-27351200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:27319000-27360400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:27323600-27361800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:27324200-27352600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr10:27324800-27350600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr10:27326400-27360600	Weak transcription	Spleen	Spleen
32	chr10:27326600-27366000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr10:27326800-27349800	Weak transcription	HepG2	liver
34	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
35	chr10:27327600-27360400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:27328000-27388200	Weak transcription	K562	blood
37	chr10:27329600-27349800	Weak transcription	HSMM	muscle
38	chr10:27329800-27352000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:27329800-27360600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
41	chr10:27330400-27360400	Weak transcription	NHEK	skin
42	chr10:27330400-27360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:27330600-27360800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:27331200-27351000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:27331200-27356800	Weak transcription	Primary B cells from cord blood	blood
46	chr10:27331400-27350600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:27331400-27360600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:27331600-27351200	Weak transcription	Ovary	ovary
49	chr10:27331600-27355800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:27331800-27350400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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