Variant report

Variant	rs11015474
Chromosome Location	chr10:27332929-27332930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10443967	0.81[ASN][1000 genomes]
rs10764670	0.82[ASN][1000 genomes]
rs10829158	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10829170	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10829171	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829178	0.82[ASN][1000 genomes]
rs11015444	0.84[EUR][1000 genomes]
rs11015445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015448	0.83[EUR][1000 genomes]
rs11015459	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015462	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015465	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015466	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015468	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015470	0.85[AFR][1000 genomes]
rs11015471	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015476	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015477	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015478	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015482	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015483	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11015490	0.82[AMR][1000 genomes]
rs11015491	0.82[AMR][1000 genomes]
rs11015492	0.82[AMR][1000 genomes]
rs11015493	0.82[AMR][1000 genomes]
rs11015494	0.82[AMR][1000 genomes]
rs11015495	0.82[AMR][1000 genomes]
rs11015496	0.82[AMR][1000 genomes]
rs11015497	0.82[AMR][1000 genomes]
rs11015498	0.82[AMR][1000 genomes]
rs11015499	0.82[AMR][1000 genomes]
rs11015501	0.91[AMR][1000 genomes]
rs11015502	0.91[AMR][1000 genomes]
rs11015508	0.84[ASN][1000 genomes]
rs12354715	0.91[AMR][1000 genomes]
rs12354840	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12354861	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12354955	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12355227	0.91[AMR][1000 genomes]
rs12355949	0.84[EUR][1000 genomes]
rs12357873	0.91[AMR][1000 genomes]
rs12358854	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12569476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1854646	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2149941	0.90[ASN][1000 genomes]
rs2274742	0.84[EUR][1000 genomes]
rs3781097	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs3781098	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4747583	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4749220	0.82[AMR][1000 genomes]
rs56907673	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60521923	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61081993	0.84[EUR][1000 genomes]
rs6482590	0.84[EUR][1000 genomes]
rs7080104	0.82[AMR][1000 genomes]
rs7083360	0.82[AMR][1000 genomes]
rs7083739	0.91[AMR][1000 genomes]
rs7900343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922043	0.82[ASN][1000 genomes]
rs9731878	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894979	chr10:27325119-27375411	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11015474	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs11015474	MASTL	cis	lung	GTEx
rs11015474	MASTL	cis	Thyroid	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
4	chr10:27288800-27357000	Weak transcription	Gastric	stomach
5	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
7	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
9	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
10	chr10:27291400-27360600	Weak transcription	Lung	lung
11	chr10:27291600-27351000	Weak transcription	NHLF	lung
12	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
13	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
14	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:27293600-27340200	Weak transcription	A549	lung
16	chr10:27295600-27345800	Weak transcription	Brain Angular Gyrus	brain
17	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
19	chr10:27309400-27334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:27312800-27335200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:27312800-27358200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:27313200-27363400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:27317400-27351800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:27318200-27357400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:27318400-27350600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr10:27319000-27351200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:27319000-27360400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:27319600-27340800	Weak transcription	GM12878-XiMat	blood
33	chr10:27319600-27347800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:27320600-27340600	Weak transcription	Fetal Brain Female	brain
35	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:27323600-27361800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:27324200-27337000	Weak transcription	HMEC	breast
38	chr10:27324200-27352600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:27324400-27339800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:27324800-27350600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:27325000-27333000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:27325400-27333400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:27325600-27340600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr10:27326000-27340000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:27326000-27343400	Weak transcription	Fetal Kidney	kidney
46	chr10:27326400-27360600	Weak transcription	Spleen	Spleen
47	chr10:27326600-27366000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:27326800-27349800	Weak transcription	HepG2	liver
49	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
50	chr10:27327200-27339800	Weak transcription	NHDF-Ad	bronchial

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