Variant report

Variant	rs11015445
Chromosome Location	chr10:27290161-27290162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27276414..27278401-chr10:27289394..27292379,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10764670	0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs10829158	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829162	0.85[YRI][hapmap]
rs10829163	0.85[YRI][hapmap]
rs10829164	0.85[YRI][hapmap]
rs10829167	0.80[LWK][hapmap];0.85[YRI][hapmap]
rs10829170	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829171	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015444	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015448	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11015459	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11015462	0.84[EUR][1000 genomes]
rs11015465	0.84[EUR][1000 genomes]
rs11015466	0.84[EUR][1000 genomes]
rs11015468	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015471	0.84[EUR][1000 genomes]
rs11015474	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015476	0.84[EUR][1000 genomes]
rs11015477	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015478	0.84[EUR][1000 genomes]
rs11015482	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11015492	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11015495	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs11015498	1.00[CEU][hapmap]
rs11015501	0.82[CEU][hapmap]
rs11015502	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs11015508	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11015603	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12354715	1.00[CEU][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap]
rs12354840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354861	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12354955	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355949	0.84[EUR][1000 genomes]
rs12356360	1.00[CEU][hapmap]
rs12358854	0.88[EUR][1000 genomes]
rs12569476	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12781031	0.81[ASN][1000 genomes]
rs1854646	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2149941	0.90[ASN][1000 genomes]
rs2274742	0.81[ASW][hapmap];1.00[CEU][hapmap];0.80[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3781097	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3781098	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747583	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4749213	0.85[YRI][hapmap]
rs56907673	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60521923	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61081993	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6482590	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7080104	1.00[CEU][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs7083739	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs7088171	0.85[YRI][hapmap]
rs7900343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7907257	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11015445	MASTL	cis	lung	GTEx
rs11015445	MASTL	cis	lymphoblastoid	seeQTL
rs11015445	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs11015445	MASTL	cis	Thyroid	GTEx

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
4	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:27278600-27309200	Weak transcription	HSMM	muscle
9	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:27280800-27290800	Weak transcription	Ovary	ovary
11	chr10:27283000-27291800	Weak transcription	Brain Anterior Caudate	brain
12	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
13	chr10:27284400-27291400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:27284400-27292400	Weak transcription	NHDF-Ad	bronchial
15	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
21	chr10:27286400-27291000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:27286600-27291000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
27	chr10:27286800-27290200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:27286800-27293800	Weak transcription	HepG2	liver
29	chr10:27287000-27290800	Weak transcription	Fetal Stomach	stomach
30	chr10:27287000-27291000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:27287200-27297400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:27287400-27290400	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
38	chr10:27288200-27290200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:27288200-27290600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr10:27288200-27292000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:27288400-27290200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:27288600-27290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:27288600-27290200	Weak transcription	Fetal Intestine Small	intestine
45	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:27288800-27295000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:27288800-27298800	Weak transcription	GM12878-XiMat	blood
49	chr10:27288800-27357000	Weak transcription	Gastric	stomach
50	chr10:27289000-27290800	Weak transcription	Primary B cells from cord blood	blood

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