Variant report

Variant	rs10829163
Chromosome Location	chr10:27317840-27317841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10458707	0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10734064	0.82[ASN][1000 genomes]
rs10741126	0.89[ASN][1000 genomes]
rs10764663	0.92[ASN][1000 genomes]
rs10764664	0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764665	0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764667	0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10764668	0.82[ASN][1000 genomes]
rs10764669	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs10764686	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs10829158	0.85[YRI][hapmap]
rs10829159	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829160	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829161	0.91[ASN][1000 genomes]
rs10829162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829164	1.00[CEU][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829166	0.92[ASN][1000 genomes]
rs10829167	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829170	0.84[AFR][1000 genomes]
rs10829172	0.90[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs10829173	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs10829174	0.95[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap]
rs10829176	0.80[ASN][1000 genomes]
rs10829180	0.81[ASN][1000 genomes]
rs10829181	0.81[ASN][1000 genomes]
rs10829191	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10829192	0.90[JPT][hapmap]
rs10829201	1.00[CHB][hapmap]
rs11015445	0.85[YRI][hapmap]
rs11015446	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015448	0.81[YRI][hapmap]
rs11015455	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015456	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015457	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015461	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015482	0.84[AFR][1000 genomes]
rs11015492	0.81[MKK][hapmap];0.81[YRI][hapmap]
rs11015522	0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs11015529	0.87[ASN][1000 genomes]
rs11015530	0.85[ASN][1000 genomes]
rs11015532	0.82[ASN][1000 genomes]
rs11015556	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11015558	0.81[CHB][hapmap]
rs11015559	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11015564	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11015565	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11015570	0.95[CHB][hapmap];0.90[CHD][hapmap]
rs11015571	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11015588	0.95[CHB][hapmap]
rs11015598	1.00[CEU][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs11015600	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs11592897	0.89[ASN][1000 genomes]
rs12354840	0.85[YRI][hapmap]
rs12355862	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12572344	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12766193	0.85[ASN][1000 genomes]
rs12768114	0.83[ASN][1000 genomes]
rs12784464	0.80[ASN][1000 genomes]
rs1411283	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs1963735	0.90[ASN][1000 genomes]
rs1981296	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs2026120	0.89[ASN][1000 genomes]
rs2183334	0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs2274634	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap]
rs2274635	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap]
rs2274741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274742	0.81[YRI][hapmap]
rs2297145	0.87[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2297147	0.81[ASN][1000 genomes]
rs2368217	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs34844053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995872	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737054	0.87[CEU][hapmap]
rs3737055	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs3780920	0.95[CHB][hapmap]
rs3780921	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3780922	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap]
rs3780926	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs3781100	0.87[ASN][1000 genomes]
rs3824593	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs3824691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3904244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3932559	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4747581	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747585	0.81[ASN][1000 genomes]
rs4749213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749214	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749216	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749225	0.85[ASN][1000 genomes]
rs55741077	0.81[ASN][1000 genomes]
rs6482585	0.89[ASN][1000 genomes]
rs6482590	0.81[YRI][hapmap]
rs6482596	0.95[CHB][hapmap]
rs6482600	0.95[CHB][hapmap]
rs6482601	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs7067696	0.95[CHB][hapmap]
rs7068375	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs7073381	0.86[ASN][1000 genomes]
rs7079792	0.95[CHB][hapmap]
rs7083768	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7086311	0.95[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.85[ASN][1000 genomes]
rs7086553	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs7086820	0.89[ASN][1000 genomes]
rs7087082	0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs7087089	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091128	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs7091723	0.95[CHB][hapmap]
rs7097009	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs7900024	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs7900343	0.92[MKK][hapmap];0.90[YRI][hapmap]
rs7901653	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs7901840	0.91[ASN][1000 genomes]
rs7902690	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7909684	0.81[ASN][1000 genomes]
rs7910430	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs7910688	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap]
rs7914630	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7919621	0.95[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs882474	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs9299837	0.95[CHB][hapmap]
rs9651378	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9971335	0.81[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10829163	MASTL	cis	lymphoblastoid	seeQTL
rs10829163	MASTL	cis	Thyroid	GTEx
rs10829163	ANKRD26	cis	multi-tissue	Pritchard
rs10829163	MASTL	cis	cerebellum	SCAN
rs10829163	MASTL	cis	Skin Sun Exposed Lower leg	GTEx
rs10829163	ANKRD26	cis	cerebellum	SCAN
rs10829163	MASTL	cis	Artery Tibial	GTEx
rs10829163	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs10829163	ANKRD26	cis	parietal	SCAN
rs10829163	ACBD5	cis	cerebellum	SCAN
rs10829163	YME1L1	cis	parietal	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
3	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
7	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:27288800-27357000	Weak transcription	Gastric	stomach
9	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
12	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
14	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
15	chr10:27290800-27326800	Weak transcription	Osteobl	bone
16	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
18	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:27291400-27360600	Weak transcription	Lung	lung
20	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:27291600-27351000	Weak transcription	NHLF	lung
24	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
25	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
26	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
27	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:27293600-27340200	Weak transcription	A549	lung
29	chr10:27295400-27319000	Weak transcription	HepG2	liver
30	chr10:27295600-27319200	Weak transcription	Ovary	ovary
31	chr10:27295600-27328800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:27295600-27345800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:27298800-27328800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:27302000-27319000	Weak transcription	Fetal Brain Female	brain
35	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:27304800-27329000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:27306000-27329200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
39	chr10:27306800-27329600	Weak transcription	NHEK	skin
40	chr10:27307000-27320000	Weak transcription	NHDF-Ad	bronchial
41	chr10:27308800-27320000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:27309000-27319200	Weak transcription	Pancreas	Pancrea
43	chr10:27309000-27319400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:27309000-27326000	Weak transcription	NH-A	brain
45	chr10:27309400-27334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:27310000-27321000	Weak transcription	Fetal Stomach	stomach
47	chr10:27310200-27332000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:27310400-27332200	Weak transcription	Fetal Heart	heart
49	chr10:27310600-27329400	Weak transcription	HSMMtube	muscle
50	chr10:27311200-27318200	Weak transcription	GM12878-XiMat	blood

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