Variant report

Variant	rs10829164
Chromosome Location	chr10:27318370-27318371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10458707	0.87[ASN][1000 genomes]
rs10734064	0.82[ASN][1000 genomes]
rs10741125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10741126	0.89[ASN][1000 genomes]
rs10764662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10764663	0.92[ASN][1000 genomes]
rs10764664	0.85[ASN][1000 genomes]
rs10764665	0.85[ASN][1000 genomes]
rs10764667	0.84[ASN][1000 genomes]
rs10764668	0.82[ASN][1000 genomes]
rs10764672	1.00[JPT][hapmap]
rs10829158	0.85[YRI][hapmap]
rs10829159	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829160	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829161	0.91[ASN][1000 genomes]
rs10829162	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829163	1.00[CEU][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829165	1.00[CHB][hapmap]
rs10829166	0.92[ASN][1000 genomes]
rs10829167	1.00[CEU][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829168	1.00[CHB][hapmap]
rs10829176	0.80[ASN][1000 genomes]
rs10829180	0.81[ASN][1000 genomes]
rs10829181	0.81[ASN][1000 genomes]
rs10829195	1.00[JPT][hapmap]
rs1085782	1.00[JPT][hapmap]
rs11015395	1.00[CHB][hapmap]
rs11015402	1.00[CHB][hapmap]
rs11015403	1.00[CHB][hapmap]
rs11015404	1.00[CHB][hapmap]
rs11015445	0.85[YRI][hapmap]
rs11015446	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015455	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015456	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015457	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015461	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015463	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11015492	0.81[YRI][hapmap]
rs11015522	0.81[ASN][1000 genomes]
rs11015529	0.87[ASN][1000 genomes]
rs11015530	0.85[ASN][1000 genomes]
rs11015532	0.82[ASN][1000 genomes]
rs11015598	1.00[CEU][hapmap]
rs11527776	1.00[CHB][hapmap]
rs11592897	0.89[ASN][1000 genomes]
rs12354840	0.86[YRI][hapmap]
rs12355862	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12411584	1.00[JPT][hapmap]
rs12413716	1.00[JPT][hapmap]
rs12415615	1.00[JPT][hapmap]
rs12572344	0.83[CEU][hapmap]
rs12766193	0.85[ASN][1000 genomes]
rs12768114	0.83[ASN][1000 genomes]
rs12784464	0.80[ASN][1000 genomes]
rs1411283	0.89[ASN][1000 genomes]
rs16916444	1.00[JPT][hapmap]
rs16927573	1.00[JPT][hapmap]
rs1753415	1.00[JPT][hapmap]
rs1775350	1.00[JPT][hapmap]
rs1963735	0.90[ASN][1000 genomes]
rs2026120	0.89[ASN][1000 genomes]
rs2183334	0.91[ASN][1000 genomes]
rs2274741	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2274742	0.81[YRI][hapmap]
rs2297145	0.87[CEU][hapmap];0.87[ASN][1000 genomes]
rs2297147	0.81[ASN][1000 genomes]
rs34844053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737054	0.87[CEU][hapmap]
rs3737055	0.81[ASN][1000 genomes]
rs3780921	0.83[CEU][hapmap]
rs3781100	0.87[ASN][1000 genomes]
rs3824691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3904244	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4747581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747584	1.00[JPT][hapmap]
rs4747585	0.81[ASN][1000 genomes]
rs4747592	1.00[JPT][hapmap]
rs4747594	1.00[JPT][hapmap]
rs4749213	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749214	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749216	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4749217	1.00[JPT][hapmap]
rs4749225	0.85[ASN][1000 genomes]
rs4749230	1.00[JPT][hapmap]
rs4749233	1.00[JPT][hapmap]
rs55741077	0.81[ASN][1000 genomes]
rs6415983	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6482585	0.89[ASN][1000 genomes]
rs6482593	1.00[JPT][hapmap]
rs6482595	1.00[JPT][hapmap]
rs6482598	1.00[JPT][hapmap]
rs7073381	0.86[ASN][1000 genomes]
rs7083768	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs7086311	0.85[ASN][1000 genomes]
rs7086820	0.89[ASN][1000 genomes]
rs7087033	1.00[JPT][hapmap]
rs7087082	0.92[ASN][1000 genomes]
rs7087089	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088171	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7097009	0.92[ASN][1000 genomes]
rs788209	1.00[CHB][hapmap]
rs788210	1.00[JPT][hapmap]
rs788220	1.00[JPT][hapmap]
rs788221	1.00[CHB][hapmap]
rs788237	1.00[JPT][hapmap]
rs7900343	0.81[MKK][hapmap];0.90[YRI][hapmap]
rs7901840	0.91[ASN][1000 genomes]
rs7902540	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7902690	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7907988	1.00[JPT][hapmap]
rs7909684	0.81[ASN][1000 genomes]
rs7910168	1.00[JPT][hapmap]
rs7910430	0.81[ASN][1000 genomes]
rs7918232	1.00[JPT][hapmap]
rs7918793	1.00[JPT][hapmap]
rs7919198	1.00[JPT][hapmap]
rs7919621	0.89[ASN][1000 genomes]
rs9651378	0.88[CEU][hapmap];0.87[ASN][1000 genomes]
rs9833	1.00[JPT][hapmap]
rs9971335	0.81[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10829164	MASTL	cis	Thyroid	GTEx
rs10829164	MASTL	cis	Artery Tibial	GTEx
rs10829164	YME1L1	Cis_1M	lymphoblastoid	RTeQTL
rs10829164	MASTL	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
3	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
7	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:27288800-27357000	Weak transcription	Gastric	stomach
9	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
12	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
14	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
15	chr10:27290800-27326800	Weak transcription	Osteobl	bone
16	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
18	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:27291400-27360600	Weak transcription	Lung	lung
20	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
21	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:27291600-27351000	Weak transcription	NHLF	lung
24	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
25	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
26	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
27	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
28	chr10:27293600-27340200	Weak transcription	A549	lung
29	chr10:27295400-27319000	Weak transcription	HepG2	liver
30	chr10:27295600-27319200	Weak transcription	Ovary	ovary
31	chr10:27295600-27328800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:27295600-27345800	Weak transcription	Brain Angular Gyrus	brain
33	chr10:27298800-27328800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:27302000-27319000	Weak transcription	Fetal Brain Female	brain
35	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:27304800-27329000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:27306000-27329200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
39	chr10:27306800-27329600	Weak transcription	NHEK	skin
40	chr10:27307000-27320000	Weak transcription	NHDF-Ad	bronchial
41	chr10:27308800-27320000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:27309000-27319200	Weak transcription	Pancreas	Pancrea
43	chr10:27309000-27319400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:27309000-27326000	Weak transcription	NH-A	brain
45	chr10:27309400-27334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:27310000-27321000	Weak transcription	Fetal Stomach	stomach
47	chr10:27310200-27332000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:27310400-27332200	Weak transcription	Fetal Heart	heart
49	chr10:27310600-27329400	Weak transcription	HSMMtube	muscle
50	chr10:27311400-27320000	Weak transcription	Fetal Muscle Trunk	muscle

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