Variant report

Variant	rs11015463
Chromosome Location	chr10:27319258-27319259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10443987	0.92[ASN][1000 genomes]
rs10741125	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741128	0.92[ASN][1000 genomes]
rs10764662	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764672	0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10829164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10829165	0.81[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829168	1.00[CHB][hapmap]
rs10829190	0.92[ASN][1000 genomes]
rs10829195	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1085782	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015395	1.00[CHB][hapmap]
rs11015402	1.00[CHB][hapmap]
rs11015403	1.00[CHB][hapmap]
rs11015404	1.00[CHB][hapmap]
rs11527776	1.00[CHB][hapmap]
rs12411584	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12413716	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12415615	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1253045	0.92[ASN][1000 genomes]
rs16916444	1.00[JPT][hapmap]
rs16927573	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1753413	0.92[ASN][1000 genomes]
rs1753415	1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[ASN][1000 genomes]
rs1755399	0.92[ASN][1000 genomes]
rs1775350	1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs1974366	0.92[ASN][1000 genomes]
rs2149413	0.92[ASN][1000 genomes]
rs2368197	0.92[ASN][1000 genomes]
rs2368204	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28463941	0.91[ASN][1000 genomes]
rs41279940	0.91[ASN][1000 genomes]
rs4747584	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4747592	1.00[JPT][hapmap]
rs4747594	1.00[JPT][hapmap]
rs4749215	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4749217	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4749219	0.91[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs4749224	0.82[ASN][1000 genomes]
rs4749228	0.92[ASN][1000 genomes]
rs4749230	1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs4749233	0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6415983	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs6482586	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6482587	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482588	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482593	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482595	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482598	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7079807	1.00[ASN][1000 genomes]
rs7087033	0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7096505	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs788209	1.00[CHB][hapmap]
rs788210	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788211	0.92[ASN][1000 genomes]
rs788220	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788221	1.00[CHB][hapmap]
rs788237	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7902540	0.90[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907988	0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs7910168	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911024	0.92[ASN][1000 genomes]
rs7915902	0.92[ASN][1000 genomes]
rs7918232	1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[ASN][1000 genomes]
rs7918793	1.00[JPT][hapmap]
rs7919198	1.00[JPT][hapmap]
rs9833	1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11015463	ACBD5	cis	cerebellum	SCAN
rs11015463	MPP7	cis	cerebellum	SCAN
rs11015463	MASTL	cis	multi-tissue	Pritchard
rs11015463	MASTL	cis	cerebellum	SCAN
rs11015463	PDSS1	cis	parietal	SCAN

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
4	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:27288800-27357000	Weak transcription	Gastric	stomach
6	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
8	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
10	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
11	chr10:27290800-27326800	Weak transcription	Osteobl	bone
12	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
14	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr10:27291400-27360600	Weak transcription	Lung	lung
16	chr10:27291600-27321200	Weak transcription	Fetal Intestine Small	intestine
17	chr10:27291600-27325200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:27291600-27331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:27291600-27351000	Weak transcription	NHLF	lung
20	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
21	chr10:27291800-27325600	Weak transcription	Primary B cells from cord blood	blood
22	chr10:27292000-27362200	Weak transcription	Fetal Brain Male	brain
23	chr10:27292200-27334800	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:27293600-27340200	Weak transcription	A549	lung
25	chr10:27295600-27328800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:27295600-27345800	Weak transcription	Brain Angular Gyrus	brain
27	chr10:27298800-27328800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:27303600-27361000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:27304800-27329000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:27306000-27329200	Weak transcription	Fetal Muscle Leg	muscle
31	chr10:27306000-27360800	Weak transcription	Esophagus	oesophagus
32	chr10:27306800-27329600	Weak transcription	NHEK	skin
33	chr10:27307000-27320000	Weak transcription	NHDF-Ad	bronchial
34	chr10:27308800-27320000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:27309000-27319400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:27309000-27326000	Weak transcription	NH-A	brain
37	chr10:27309400-27334800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:27310000-27321000	Weak transcription	Fetal Stomach	stomach
39	chr10:27310200-27332000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr10:27310400-27332200	Weak transcription	Fetal Heart	heart
41	chr10:27310600-27329400	Weak transcription	HSMMtube	muscle
42	chr10:27311400-27320000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr10:27311400-27320200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:27312400-27324000	Weak transcription	Fetal Thymus	thymus
45	chr10:27312600-27320000	Weak transcription	HMEC	breast
46	chr10:27312600-27330200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:27312800-27320000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:27312800-27324000	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:27312800-27324000	Weak transcription	Brain Substantia Nigra	brain
50	chr10:27312800-27329200	Weak transcription	Primary T cells fromperipheralblood	blood

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