Variant report

Variant	rs10741128
Chromosome Location	chr10:27411509-27411510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27396389..27398722-chr10:27411007..27413191,2	K562	blood:
2	chr10:27409827..27412123-chr10:27440887..27443323,2	K562	blood:
3	chr10:27406725..27410410-chr10:27410998..27413611,3	K562	blood:

Variant related genes	Relation type
ENSG00000136758	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10443987	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741125	0.92[ASN][1000 genomes]
rs10764662	0.92[ASN][1000 genomes]
rs10764672	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829165	0.92[ASN][1000 genomes]
rs10829190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1085782	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015463	0.92[ASN][1000 genomes]
rs12411584	0.92[ASN][1000 genomes]
rs12413716	0.92[ASN][1000 genomes]
rs12415615	0.92[ASN][1000 genomes]
rs1253045	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927573	0.92[ASN][1000 genomes]
rs1753413	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1753415	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1755399	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775350	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974366	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149413	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368197	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463941	0.83[ASN][1000 genomes]
rs41279940	0.83[ASN][1000 genomes]
rs4747584	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749221	0.85[AMR][1000 genomes]
rs4749224	0.92[ASN][1000 genomes]
rs4749228	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749230	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749233	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415983	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6482587	0.92[ASN][1000 genomes]
rs6482588	0.92[ASN][1000 genomes]
rs6482593	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482594	0.86[AMR][1000 genomes]
rs6482595	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079807	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7087033	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096505	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs788210	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788211	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788220	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788237	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902540	0.92[ASN][1000 genomes]
rs7907988	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910168	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7911024	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915902	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918232	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10741128	MASTL	cis	Whole Blood	GTEx
rs10741128	MASTL	cis	Nerve Tibial	GTEx
rs10741128	MASTL	cis	Muscle Skeletal	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27390400-27417600	Weak transcription	Stomach Mucosa	stomach
5	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:27396200-27412800	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr10:27396200-27425400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:27396400-27418400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:27396600-27425400	Strong transcription	Fetal Muscle Trunk	muscle
15	chr10:27396800-27411800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:27397000-27412600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:27397000-27425600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
20	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:27398600-27418800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr10:27398600-27422000	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr10:27398600-27425000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr10:27398600-27425200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:27398600-27425200	Strong transcription	Fetal Intestine Large	intestine
28	chr10:27398600-27425400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr10:27398600-27426400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:27398600-27427000	Strong transcription	GM12878-XiMat	blood
31	chr10:27398600-27427800	Strong transcription	Adipose Nuclei	Adipose
32	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:27398600-27436400	Strong transcription	Dnd41	blood
37	chr10:27398800-27425400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:27398800-27426000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:27398800-27427600	Strong transcription	Fetal Lung	lung
40	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:27399000-27412800	Strong transcription	Stomach Smooth Muscle	stomach
43	chr10:27399000-27415400	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr10:27399000-27426400	Strong transcription	Osteobl	bone
45	chr10:27399000-27426800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr10:27399000-27431400	Strong transcription	Placenta	Placenta
47	chr10:27399200-27412200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:27399200-27424800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:27399200-27425400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:27399400-27412600	Strong transcription	Primary T cells from cord blood	blood

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