Variant report

Variant	rs7911024
Chromosome Location	chr10:27433636-27433637
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27406142..27408031-chr10:27433375..27436019,2	K562	blood:
2	chr10:27433200..27434750-chr10:27436541..27439491,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10443987	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741125	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10741128	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764662	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10764672	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829164	1.00[JPT][hapmap]
rs10829165	0.92[ASN][1000 genomes]
rs10829190	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1085782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015463	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11812283	1.00[JPT][hapmap]
rs12411584	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12413716	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12415615	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1253045	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916444	1.00[JPT][hapmap]
rs16927573	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1753413	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1753415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1755399	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974366	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149413	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368197	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463941	0.83[ASN][1000 genomes]
rs41279940	0.83[ASN][1000 genomes]
rs4747584	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747592	1.00[JPT][hapmap]
rs4747594	1.00[JPT][hapmap]
rs4749217	1.00[JPT][hapmap]
rs4749221	0.84[AMR][1000 genomes]
rs4749224	0.92[ASN][1000 genomes]
rs4749228	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749233	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415983	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6482587	0.92[ASN][1000 genomes]
rs6482588	0.92[ASN][1000 genomes]
rs6482593	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482594	0.85[AMR][1000 genomes]
rs6482595	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079807	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7087033	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096505	0.92[ASN][1000 genomes]
rs788210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788211	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902540	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7907988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7915902	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918232	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918793	1.00[JPT][hapmap]
rs7919198	1.00[JPT][hapmap]
rs9833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7911024	MASTL	cis	Whole Blood	GTEx
rs7911024	MASTL	cis	Muscle Skeletal	GTEx
rs7911024	MASTL	cis	Nerve Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
8	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:27398600-27436400	Strong transcription	Dnd41	blood
14	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:27400400-27438400	Strong transcription	Liver	Liver
20	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:27407800-27436400	Weak transcription	Right Ventricle	heart
22	chr10:27411200-27436000	Weak transcription	Esophagus	oesophagus
23	chr10:27412400-27440200	Weak transcription	Fetal Heart	heart
24	chr10:27415400-27436200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:27418000-27436400	Weak transcription	Spleen	Spleen
26	chr10:27419200-27438600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr10:27419200-27438800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr10:27419400-27441400	Weak transcription	Stomach Mucosa	stomach
29	chr10:27419800-27436200	Weak transcription	Gastric	stomach
30	chr10:27421000-27436200	Weak transcription	Fetal Brain Male	brain
31	chr10:27423400-27436400	Weak transcription	Colonic Mucosa	Colon
32	chr10:27423600-27435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:27423800-27435600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:27424000-27436400	Weak transcription	Small Intestine	intestine
35	chr10:27424800-27436000	Weak transcription	Aorta	Aorta
36	chr10:27425000-27434800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:27425000-27436200	Weak transcription	Brain Substantia Nigra	brain
38	chr10:27425400-27435000	Weak transcription	Brain Angular Gyrus	brain
39	chr10:27425600-27435200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:27426800-27434800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:27427000-27438600	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:27427200-27436600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:27427200-27438000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:27427200-27438400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:27427600-27438000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr10:27428000-27433800	Strong transcription	Fetal Muscle Leg	muscle
47	chr10:27428000-27438000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr10:27428000-27438600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:27428000-27438800	Strong transcription	Fetal Intestine Large	intestine
50	chr10:27428000-27439000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links