Variant report

Variant	rs12413716
Chromosome Location	chr10:27378373-27378374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10443987	0.92[ASN][1000 genomes]
rs10741125	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10741128	0.92[ASN][1000 genomes]
rs10764662	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10764672	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10829164	1.00[JPT][hapmap]
rs10829165	0.82[ASN][1000 genomes]
rs10829190	0.92[ASN][1000 genomes]
rs10829195	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1085782	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs11015463	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11015572	1.00[CHB][hapmap]
rs11812283	1.00[JPT][hapmap]
rs12218864	1.00[CHB][hapmap]
rs12411584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415615	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1253045	0.92[ASN][1000 genomes]
rs16916444	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16927573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927663	1.00[CHB][hapmap]
rs1753413	0.92[ASN][1000 genomes]
rs1753415	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs1755399	0.92[ASN][1000 genomes]
rs1775350	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs1974366	0.92[ASN][1000 genomes]
rs2149413	0.92[ASN][1000 genomes]
rs2368197	0.92[ASN][1000 genomes]
rs28463941	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41279940	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747584	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs4747592	1.00[JPT][hapmap]
rs4747594	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs4749217	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4749224	1.00[ASN][1000 genomes]
rs4749228	0.92[ASN][1000 genomes]
rs4749230	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4749233	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6415983	1.00[JPT][hapmap]
rs6482586	1.00[YRI][hapmap]
rs6482587	0.82[ASN][1000 genomes]
rs6482588	0.82[ASN][1000 genomes]
rs6482593	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482595	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482598	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7079807	0.82[ASN][1000 genomes]
rs7087033	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7096505	0.82[ASN][1000 genomes]
rs788210	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs788211	0.92[ASN][1000 genomes]
rs788220	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs788237	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs7902540	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7907988	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7910168	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911024	0.92[ASN][1000 genomes]
rs7915902	0.92[ASN][1000 genomes]
rs7918232	1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[ASN][1000 genomes]
rs7918793	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7919198	1.00[JPT][hapmap]
rs9833	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27291600-27388000	Weak transcription	Small Intestine	intestine
3	chr10:27313200-27388200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:27326800-27388200	Weak transcription	Brain Substantia Nigra	brain
9	chr10:27328000-27388200	Weak transcription	K562	blood
10	chr10:27330200-27381400	Weak transcription	HSMMtube	muscle
11	chr10:27333000-27384600	Weak transcription	Fetal Heart	heart
12	chr10:27350200-27387800	Weak transcription	HMEC	breast
13	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:27360400-27378800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:27360400-27383800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:27360400-27384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:27360600-27384600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:27361600-27388200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:27362200-27388400	Weak transcription	Colonic Mucosa	Colon
20	chr10:27362400-27388000	Weak transcription	Right Ventricle	heart
21	chr10:27362400-27388200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:27362400-27388400	Weak transcription	Pancreas	Pancrea
23	chr10:27362600-27388400	Weak transcription	Esophagus	oesophagus
24	chr10:27362600-27388400	Weak transcription	Spleen	Spleen
25	chr10:27362600-27388800	Weak transcription	Gastric	stomach
26	chr10:27362800-27382200	Weak transcription	Brain Angular Gyrus	brain
27	chr10:27362800-27388600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:27365000-27388000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:27366600-27381600	Weak transcription	HSMM	muscle
30	chr10:27366600-27382200	Weak transcription	NHEK	skin
31	chr10:27366600-27388000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr10:27366600-27388600	Weak transcription	Fetal Kidney	kidney
33	chr10:27366800-27380800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:27367200-27382600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:27367400-27388200	Weak transcription	Primary B cells from peripheral blood	blood
36	chr10:27367600-27388400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:27367800-27387800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:27368400-27380400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:27369800-27388200	Weak transcription	NHDF-Ad	bronchial
40	chr10:27370000-27378400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:27370000-27388600	Weak transcription	Aorta	Aorta
42	chr10:27371000-27383600	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:27374200-27378800	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:27374200-27378800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:27374800-27382000	Weak transcription	Brain Anterior Caudate	brain
46	chr10:27375000-27382800	Weak transcription	GM12878-XiMat	blood
47	chr10:27375600-27380400	Strong transcription	Fetal Muscle Leg	muscle
48	chr10:27375800-27382800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:27375800-27383400	Strong transcription	Primary T cells from cord blood	blood
50	chr10:27376000-27378600	Strong transcription	Osteobl	bone

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