Variant report

Variant	rs10764662
Chromosome Location	chr10:27300643-27300644
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27299026..27300865-chr10:27302349..27304105,2	K562	blood:

Variant related genes	Relation type
ENSG00000107890	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10443987	0.92[ASN][1000 genomes]
rs10741125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741128	0.92[ASN][1000 genomes]
rs10764672	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10829164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10829165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829168	1.00[CHB][hapmap]
rs10829190	0.92[ASN][1000 genomes]
rs10829195	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1085782	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015395	1.00[CHB][hapmap]
rs11015402	1.00[CHB][hapmap]
rs11015403	1.00[CHB][hapmap]
rs11015404	1.00[CHB][hapmap]
rs11015463	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11527776	1.00[CHB][hapmap]
rs12411584	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12413716	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12415615	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1253045	0.92[ASN][1000 genomes]
rs16916444	1.00[JPT][hapmap]
rs16927573	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1753413	0.92[ASN][1000 genomes]
rs1753415	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1755399	0.92[ASN][1000 genomes]
rs1775350	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1974366	0.92[ASN][1000 genomes]
rs2149413	0.92[ASN][1000 genomes]
rs2368197	0.92[ASN][1000 genomes]
rs2368204	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28463941	0.91[ASN][1000 genomes]
rs41279940	0.91[ASN][1000 genomes]
rs4747584	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4747592	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs4749215	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4749217	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4749224	0.82[ASN][1000 genomes]
rs4749228	0.92[ASN][1000 genomes]
rs4749230	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4749233	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6415983	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6482586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482587	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482588	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482593	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482595	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482598	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7079807	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087033	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7096505	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788209	1.00[CHB][hapmap]
rs788210	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788211	0.92[ASN][1000 genomes]
rs788220	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788221	1.00[CHB][hapmap]
rs788237	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7902540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907988	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7910168	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911024	0.92[ASN][1000 genomes]
rs7915902	0.92[ASN][1000 genomes]
rs7918232	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7918793	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7919198	1.00[JPT][hapmap]
rs9833	1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:27278600-27309200	Weak transcription	HSMM	muscle
3	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
4	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
10	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
14	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
19	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:27288600-27312000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:27288800-27357000	Weak transcription	Gastric	stomach
23	chr10:27289200-27302400	Weak transcription	Right Ventricle	heart
24	chr10:27289200-27361200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:27289600-27309800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:27289600-27310000	Weak transcription	HSMMtube	muscle
27	chr10:27289600-27312400	Weak transcription	Brain Substantia Nigra	brain
28	chr10:27289600-27314200	Weak transcription	Spleen	Spleen
29	chr10:27289600-27318800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:27289600-27360800	Weak transcription	Hela-S3	cervix
31	chr10:27289800-27360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:27290200-27351400	Weak transcription	Thymus	Thymus
33	chr10:27290200-27361400	Weak transcription	Placenta	Placenta
34	chr10:27290400-27309600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:27290600-27310000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:27290600-27314800	Weak transcription	Fetal Kidney	kidney
37	chr10:27290800-27326800	Weak transcription	Osteobl	bone
38	chr10:27291000-27310200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:27291000-27312200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:27291200-27316600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:27291200-27324000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:27291400-27304200	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:27291400-27324000	Weak transcription	Brain Germinal Matrix	brain
44	chr10:27291400-27324200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:27291400-27360600	Weak transcription	Lung	lung
46	chr10:27291600-27304400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr10:27291600-27308800	Weak transcription	Fetal Stomach	stomach
48	chr10:27291600-27312600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:27291600-27314600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:27291600-27316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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