Variant report

Variant	rs11527776
Chromosome Location	chr10:27286000-27286001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27278560..27280778-chr10:27284132..27286157,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10741125	1.00[CHB][hapmap]
rs10764662	1.00[CHB][hapmap]
rs10829150	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829164	1.00[CHB][hapmap]
rs10829165	1.00[CHB][hapmap]
rs10829168	1.00[CHB][hapmap]
rs11015395	1.00[CHB][hapmap]
rs11015402	1.00[CHB][hapmap]
rs11015403	1.00[CHB][hapmap]
rs11015404	1.00[CHB][hapmap]
rs11015439	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015463	1.00[CHB][hapmap]
rs1573141	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1755401	1.00[ASN][1000 genomes]
rs2012657	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183335	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4237380	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747580	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6415983	1.00[CHB][hapmap]
rs7071525	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7094511	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72805452	1.00[ASN][1000 genomes]
rs788209	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs788219	1.00[ASN][1000 genomes]
rs788221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7897309	1.00[ASN][1000 genomes]
rs7902540	1.00[CHB][hapmap]
rs7914382	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
7	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
10	chr10:27273200-27290000	Weak transcription	Primary T cells from cord blood	blood
11	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:27278600-27309200	Weak transcription	HSMM	muscle
14	chr10:27278800-27286600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:27279800-27286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:27280800-27290800	Weak transcription	Ovary	ovary
18	chr10:27281400-27286200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:27282600-27286600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:27283000-27291800	Weak transcription	Brain Anterior Caudate	brain
21	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
22	chr10:27284400-27291400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:27284400-27292400	Weak transcription	NHDF-Ad	bronchial
24	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
28	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr10:27285800-27286600	Weak transcription	Fetal Stomach	stomach

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