Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD26-4	chr10:27272878-27273353	NONHSAT011879

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10741125	1.00[CHB][hapmap]
rs10764662	1.00[CHB][hapmap]
rs10829150	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10829164	1.00[CHB][hapmap]
rs10829165	1.00[CHB][hapmap]
rs10829168	1.00[CHB][hapmap];0.80[TSI][hapmap]
rs11015395	1.00[CHB][hapmap]
rs11015402	1.00[CHB][hapmap]
rs11015403	1.00[CHB][hapmap]
rs11015404	1.00[CHB][hapmap]
rs11015439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015463	1.00[CHB][hapmap]
rs11527776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221372	1.00[LWK][hapmap]
rs1573141	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1755401	1.00[ASN][1000 genomes]
rs2183335	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4237380	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237381	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4747580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6415983	1.00[CHB][hapmap]
rs7071525	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7094511	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72805452	1.00[ASN][1000 genomes]
rs788209	1.00[CHB][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];1.00[ASN][1000 genomes]
rs788219	1.00[ASN][1000 genomes]
rs788221	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7897309	1.00[ASN][1000 genomes]
rs7902540	1.00[CHB][hapmap]
rs7914382	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2012657	MASTL	cis	multi-tissue	Pritchard
rs2012657	MASTL	cis	cerebellum	SCAN
rs2012657	MPP7	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27253400-27286400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:27255400-27286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:27255600-27282600	Weak transcription	Brain Anterior Caudate	brain
6	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
8	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:27269000-27273200	Strong transcription	Primary T cells from cord blood	blood
10	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
12	chr10:27270600-27273400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:27271600-27273200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:27272600-27276600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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