Variant report

Variant	rs10741125
Chromosome Location	chr10:27288925-27288926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10443987	0.92[ASN][1000 genomes]
rs10741128	0.92[ASN][1000 genomes]
rs10764662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764672	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10829164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10829165	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.95[MKK][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829168	1.00[CHB][hapmap]
rs10829190	0.92[ASN][1000 genomes]
rs10829195	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1085782	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015395	1.00[CHB][hapmap]
rs11015402	1.00[CHB][hapmap]
rs11015403	1.00[CHB][hapmap]
rs11015404	1.00[CHB][hapmap]
rs11015463	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11527776	1.00[CHB][hapmap]
rs12411584	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12413716	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12415615	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1253045	0.92[ASN][1000 genomes]
rs16927573	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1753413	0.92[ASN][1000 genomes]
rs1753415	0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.82[ASN][1000 genomes]
rs1755399	0.92[ASN][1000 genomes]
rs1775350	0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs1974366	0.92[ASN][1000 genomes]
rs2149413	0.92[ASN][1000 genomes]
rs2368197	0.92[ASN][1000 genomes]
rs2368204	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28463941	0.91[ASN][1000 genomes]
rs41279940	0.91[ASN][1000 genomes]
rs4747584	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4749215	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4749217	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4749224	0.82[ASN][1000 genomes]
rs4749228	0.92[ASN][1000 genomes]
rs4749230	1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs4749233	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6415983	0.90[ASW][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs6482586	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6482587	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482588	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482593	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482595	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482598	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7079807	1.00[ASN][1000 genomes]
rs7087033	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7096505	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788209	1.00[CHB][hapmap]
rs788210	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788211	0.92[ASN][1000 genomes]
rs788220	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788221	1.00[CHB][hapmap]
rs788237	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7902540	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907988	1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs7910168	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911024	0.92[ASN][1000 genomes]
rs7915902	0.92[ASN][1000 genomes]
rs7918232	0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[ASN][1000 genomes]
rs9833	1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10741125	MPP7	cis	cerebellum	SCAN
rs10741125	MASTL	cis	cerebellum	SCAN

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27243000-27294800	Weak transcription	Liver	Liver
2	chr10:27251600-27290000	Weak transcription	Fetal Intestine Large	intestine
3	chr10:27257600-27319000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:27258200-27291200	Weak transcription	Left Ventricle	heart
5	chr10:27258400-27290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:27269000-27293400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:27270400-27291000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:27273200-27290000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:27277000-27291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:27277800-27290200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:27278600-27309200	Weak transcription	HSMM	muscle
12	chr10:27280600-27295000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:27280800-27290800	Weak transcription	Ovary	ovary
14	chr10:27283000-27291800	Weak transcription	Brain Anterior Caudate	brain
15	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
16	chr10:27284400-27291400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:27284400-27292400	Weak transcription	NHDF-Ad	bronchial
18	chr10:27284400-27310400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:27284800-27308800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:27285000-27319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:27285400-27312000	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:27285400-27319200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:27286200-27302600	Weak transcription	Fetal Heart	heart
24	chr10:27286400-27291000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:27286400-27310000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:27286400-27316600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr10:27286600-27291000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:27286600-27311800	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr10:27286600-27312000	Weak transcription	Fetal Thymus	thymus
30	chr10:27286800-27290200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr10:27286800-27293800	Weak transcription	HepG2	liver
32	chr10:27287000-27290800	Weak transcription	Fetal Stomach	stomach
33	chr10:27287000-27291000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:27287000-27308800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:27287000-27312000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:27287000-27350600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:27287200-27297400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:27287400-27290400	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:27287800-27310000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:27287800-27350600	Weak transcription	Aorta	Aorta
41	chr10:27288000-27290000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:27288200-27289800	Weak transcription	Fetal Lung	lung
43	chr10:27288200-27290200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:27288200-27290600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr10:27288200-27292000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:27288400-27290200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:27288400-27329400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:27288600-27290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr10:27288600-27290200	Weak transcription	Fetal Intestine Small	intestine
50	chr10:27288600-27312000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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