Variant report

Variant	rs12415615
Chromosome Location	chr10:27426264-27426265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:27425881-27429350	K562	blood:	n/a	n/a
2	POLR2A	chr10:27424441-27430915	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27420918..27424983-chr10:27426068..27428303,5	K562	blood:
2	chr10:27425181..27427784-chr10:27528316..27531053,2	MCF-7	breast:

Variant related genes	Relation type
YME1L1	TF binding region
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10443987	0.92[ASN][1000 genomes]
rs10741125	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10741128	0.92[ASN][1000 genomes]
rs10764662	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10764672	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10829164	1.00[JPT][hapmap]
rs10829165	0.82[ASN][1000 genomes]
rs10829190	0.92[ASN][1000 genomes]
rs10829195	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1085782	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11015463	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11015572	1.00[CHB][hapmap]
rs11812283	1.00[JPT][hapmap]
rs12218864	1.00[CHB][hapmap]
rs12411584	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12413716	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1253045	0.92[ASN][1000 genomes]
rs16916444	1.00[JPT][hapmap]
rs16927573	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16927663	1.00[CHB][hapmap]
rs1753413	0.92[ASN][1000 genomes]
rs1753415	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1755399	0.92[ASN][1000 genomes]
rs1775350	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1974366	0.92[ASN][1000 genomes]
rs2149413	0.92[ASN][1000 genomes]
rs2368197	0.92[ASN][1000 genomes]
rs28463941	0.91[ASN][1000 genomes]
rs41279940	0.91[ASN][1000 genomes]
rs4747584	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4747592	1.00[JPT][hapmap]
rs4747594	1.00[JPT][hapmap]
rs4749217	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4749224	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4749228	0.92[ASN][1000 genomes]
rs4749230	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4749233	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6415983	1.00[JPT][hapmap]
rs6482587	0.82[ASN][1000 genomes]
rs6482588	0.82[ASN][1000 genomes]
rs6482593	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482595	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6482598	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7079807	0.82[ASN][1000 genomes]
rs7087033	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7096505	0.82[ASN][1000 genomes]
rs788210	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788211	0.92[ASN][1000 genomes]
rs788220	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs788237	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7902540	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7907988	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7910168	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7911024	0.92[ASN][1000 genomes]
rs7915902	0.92[ASN][1000 genomes]
rs7918232	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7918793	1.00[JPT][hapmap]
rs7919198	1.00[JPT][hapmap]
rs9833	1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
12	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:27398600-27426400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:27398600-27427000	Strong transcription	GM12878-XiMat	blood
17	chr10:27398600-27427800	Strong transcription	Adipose Nuclei	Adipose
18	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:27398600-27434800	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:27398600-27436400	Strong transcription	Dnd41	blood
23	chr10:27398800-27427600	Strong transcription	Fetal Lung	lung
24	chr10:27398800-27438200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:27398800-27438200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:27399000-27426400	Strong transcription	Osteobl	bone
27	chr10:27399000-27426800	Strong transcription	Primary B cells from peripheral blood	blood
28	chr10:27399000-27431400	Strong transcription	Placenta	Placenta
29	chr10:27399600-27435200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:27399600-27438400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:27399800-27438600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:27400400-27438400	Strong transcription	Liver	Liver
33	chr10:27401200-27435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:27403000-27428400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:27403200-27431600	Strong transcription	NH-A	brain
36	chr10:27405800-27427600	Strong transcription	HSMM	muscle
37	chr10:27407800-27436400	Weak transcription	Right Ventricle	heart
38	chr10:27411200-27436000	Weak transcription	Esophagus	oesophagus
39	chr10:27412400-27440200	Weak transcription	Fetal Heart	heart
40	chr10:27413600-27430800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:27415400-27436200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr10:27416800-27430800	Strong transcription	HUVEC	blood vessel
43	chr10:27418000-27436400	Weak transcription	Spleen	Spleen
44	chr10:27418200-27430000	Weak transcription	Pancreas	Pancrea
45	chr10:27419200-27426600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:27419200-27438600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr10:27419200-27438800	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr10:27419400-27441400	Weak transcription	Stomach Mucosa	stomach
49	chr10:27419800-27436200	Weak transcription	Gastric	stomach
50	chr10:27421000-27430800	Weak transcription	Hela-S3	cervix

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