Variant report

Variant	rs4749224
Chromosome Location	chr10:27388202-27388203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27387680..27390568-chr10:27529145..27530975,2	K562	blood:

Variant related genes	Relation type
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10443987	0.92[ASN][1000 genomes]
rs10741125	0.82[ASN][1000 genomes]
rs10741128	0.92[ASN][1000 genomes]
rs10764662	0.82[ASN][1000 genomes]
rs10764672	0.92[ASN][1000 genomes]
rs10829165	0.82[ASN][1000 genomes]
rs10829190	0.92[ASN][1000 genomes]
rs10829195	0.92[ASN][1000 genomes]
rs1085782	0.92[ASN][1000 genomes]
rs11015463	0.82[ASN][1000 genomes]
rs12411584	1.00[ASN][1000 genomes]
rs12413716	1.00[ASN][1000 genomes]
rs12415615	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1253045	0.92[ASN][1000 genomes]
rs16927573	1.00[ASN][1000 genomes]
rs1753413	0.92[ASN][1000 genomes]
rs1753415	0.82[ASN][1000 genomes]
rs1755399	0.92[ASN][1000 genomes]
rs1775350	0.92[ASN][1000 genomes]
rs1974366	0.92[ASN][1000 genomes]
rs2149413	0.92[ASN][1000 genomes]
rs2368197	0.92[ASN][1000 genomes]
rs28463941	0.91[ASN][1000 genomes]
rs41279940	0.91[ASN][1000 genomes]
rs4747584	0.92[ASN][1000 genomes]
rs4749217	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4749228	0.92[ASN][1000 genomes]
rs4749230	0.92[ASN][1000 genomes]
rs4749233	0.92[ASN][1000 genomes]
rs6482587	0.82[ASN][1000 genomes]
rs6482588	0.82[ASN][1000 genomes]
rs6482593	0.92[ASN][1000 genomes]
rs6482595	0.92[ASN][1000 genomes]
rs6482598	0.92[ASN][1000 genomes]
rs7079807	0.82[ASN][1000 genomes]
rs7087033	0.92[ASN][1000 genomes]
rs7096505	0.82[ASN][1000 genomes]
rs788210	0.92[ASN][1000 genomes]
rs788211	0.92[ASN][1000 genomes]
rs788220	0.92[ASN][1000 genomes]
rs788237	0.92[ASN][1000 genomes]
rs7902540	0.82[ASN][1000 genomes]
rs7907988	0.92[ASN][1000 genomes]
rs7910168	0.84[ASN][1000 genomes]
rs7911024	0.92[ASN][1000 genomes]
rs7915902	0.92[ASN][1000 genomes]
rs7918232	0.92[ASN][1000 genomes]
rs9833	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364452	chr10:27385286-27395686	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3369347	chr10:27385331-27395478	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27283200-27388400	Weak transcription	Psoas Muscle	Psoas
2	chr10:27313200-27388600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:27313400-27388400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:27314600-27388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:27323400-27388600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:27358600-27388400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:27362200-27388400	Weak transcription	Colonic Mucosa	Colon
8	chr10:27362400-27388400	Weak transcription	Pancreas	Pancrea
9	chr10:27362600-27388400	Weak transcription	Esophagus	oesophagus
10	chr10:27362600-27388400	Weak transcription	Spleen	Spleen
11	chr10:27362600-27388800	Weak transcription	Gastric	stomach
12	chr10:27362800-27388600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:27366600-27388600	Weak transcription	Fetal Kidney	kidney
14	chr10:27367600-27388400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:27370000-27388600	Weak transcription	Aorta	Aorta
16	chr10:27378000-27388400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:27378200-27388400	Weak transcription	Primary B cells from cord blood	blood
18	chr10:27378200-27388400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:27378800-27388600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:27378800-27388800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:27378800-27388800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:27379000-27388400	Weak transcription	Fetal Thymus	thymus
23	chr10:27382200-27388400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:27382600-27388400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:27382800-27388400	Weak transcription	Ovary	ovary
26	chr10:27382800-27388600	Weak transcription	HSMMtube	muscle
27	chr10:27383000-27388400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:27383000-27388600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:27383000-27388600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr10:27383000-27388600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:27383400-27388400	Weak transcription	NH-A	brain
32	chr10:27383600-27388400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:27383600-27388400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:27384600-27388400	Weak transcription	Fetal Intestine Large	intestine
35	chr10:27384800-27388400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:27386200-27388400	Weak transcription	Fetal Intestine Small	intestine
37	chr10:27386800-27388400	Weak transcription	Lung	lung
38	chr10:27387800-27388600	Enhancers	Primary T cells fromperipheralblood	blood
39	chr10:27387800-27388600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr10:27387800-27388600	Enhancers	Fetal Heart	heart
41	chr10:27387800-27388800	Enhancers	Left Ventricle	heart
42	chr10:27388000-27388400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:27388000-27388400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr10:27388000-27388400	Enhancers	Fetal Muscle Trunk	muscle
45	chr10:27388000-27388400	Enhancers	Fetal Muscle Leg	muscle
46	chr10:27388000-27388400	Enhancers	Thymus	Thymus
47	chr10:27388000-27388400	Enhancers	Osteobl	bone
48	chr10:27388000-27388600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr10:27388000-27388600	Enhancers	Fetal Brain Male	brain
50	chr10:27388000-27388600	Enhancers	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links