Variant report

Variant	rs9833
Chromosome Location	chr10:27400861-27400862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10443987	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741125	1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs10741128	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764662	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10764672	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829164	1.00[JPT][hapmap]
rs10829165	0.92[ASN][1000 genomes]
rs10829190	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829195	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1085782	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015463	1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs11812283	1.00[JPT][hapmap]
rs12411584	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs12413716	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs12415615	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1253045	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916444	1.00[JPT][hapmap]
rs16927573	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs1753413	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1753415	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1755399	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775350	0.87[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974366	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368197	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28463941	0.83[ASN][1000 genomes]
rs41279940	0.83[ASN][1000 genomes]
rs4747584	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747592	1.00[JPT][hapmap]
rs4747594	1.00[JPT][hapmap]
rs4749217	1.00[JPT][hapmap]
rs4749221	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4749224	0.92[ASN][1000 genomes]
rs4749228	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749230	0.93[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415983	0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6482586	1.00[YRI][hapmap]
rs6482587	0.92[ASN][1000 genomes]
rs6482588	0.92[ASN][1000 genomes]
rs6482593	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482594	0.88[AMR][1000 genomes]
rs6482595	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482598	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079807	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7087033	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096505	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs788210	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788211	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788237	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902540	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7907988	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7911024	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915902	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918232	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918793	1.00[JPT][hapmap]
rs7919198	1.00[JPT][hapmap]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs9833	MASTL	cis	Esophagus Muscularis	GTEx
rs9833	MASTL	cis	Nerve Tibial	GTEx
rs9833	ACBD5	cis	cerebellum	SCAN
rs9833	MASTL	cis	Muscle Skeletal	GTEx
rs9833	MASTL	cis	Whole Blood	GTEx
rs9833	MPP7	cis	cerebellum	SCAN
rs9833	MASTL	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27389800-27441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:27390000-27401200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:27390000-27406400	Weak transcription	Small Intestine	intestine
4	chr10:27390000-27408000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:27390000-27442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:27390200-27401000	Weak transcription	Hela-S3	cervix
7	chr10:27390200-27401200	Weak transcription	Psoas Muscle	Psoas
8	chr10:27390200-27435000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:27390400-27401400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:27390400-27401400	Weak transcription	Esophagus	oesophagus
11	chr10:27390400-27401400	Weak transcription	Gastric	stomach
12	chr10:27390400-27401400	Weak transcription	Right Ventricle	heart
13	chr10:27390400-27417600	Weak transcription	Stomach Mucosa	stomach
14	chr10:27393800-27438600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:27394000-27426600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:27394200-27432600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:27394400-27401400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr10:27394400-27403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:27394800-27432800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:27395400-27437800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:27396200-27412800	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:27396200-27425400	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:27396200-27440600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:27396400-27418400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:27396600-27401800	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr10:27396600-27425400	Strong transcription	Fetal Muscle Trunk	muscle
27	chr10:27396800-27411800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:27396800-27432000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:27397000-27412600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:27397000-27425600	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:27397600-27438600	Strong transcription	Fetal Thymus	thymus
32	chr10:27398200-27434200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:27398400-27401800	Strong transcription	HSMM	muscle
34	chr10:27398400-27401800	Strong transcription	NH-A	brain
35	chr10:27398400-27428400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:27398400-27435200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr10:27398600-27401800	Strong transcription	Brain Anterior Caudate	brain
38	chr10:27398600-27405000	Strong transcription	Brain Substantia Nigra	brain
39	chr10:27398600-27418800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:27398600-27422000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr10:27398600-27425000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr10:27398600-27425200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:27398600-27425200	Strong transcription	Fetal Intestine Large	intestine
44	chr10:27398600-27425400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr10:27398600-27426400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:27398600-27427000	Strong transcription	GM12878-XiMat	blood
47	chr10:27398600-27427800	Strong transcription	Adipose Nuclei	Adipose
48	chr10:27398600-27431600	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:27398600-27434800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:27398600-27434800	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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