Variant report

Variant	rs7897309
Chromosome Location	chr10:27389197-27389198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27387680..27390568-chr10:27529145..27530975,2	K562	blood:

Variant related genes	Relation type
ENSG00000107897	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11015439	1.00[ASN][1000 genomes]
rs11527776	1.00[ASN][1000 genomes]
rs1755401	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2012657	1.00[ASN][1000 genomes]
rs4237380	1.00[ASN][1000 genomes]
rs517486	1.00[ASN][1000 genomes]
rs532680	1.00[ASN][1000 genomes]
rs546634	1.00[ASN][1000 genomes]
rs7094511	1.00[ASN][1000 genomes]
rs72805452	1.00[ASN][1000 genomes]
rs788209	1.00[ASN][1000 genomes]
rs788219	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs788221	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364452	chr10:27385286-27395686	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3369347	chr10:27385331-27395478	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27388000-27390000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:27388000-27390000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:27388200-27389200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:27388200-27389200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr10:27388200-27389600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:27388200-27389600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:27388200-27389600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:27388200-27389600	Active TSS	Placenta	Placenta
9	chr10:27388200-27389600	Active TSS	HSMM	muscle
10	chr10:27388200-27389600	Active TSS	K562	blood
11	chr10:27388200-27389800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:27388200-27389800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:27388200-27390000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:27388200-27390000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr10:27388200-27390000	Active TSS	A549	lung
16	chr10:27388200-27390000	Active TSS	NHDF-Ad	bronchial
17	chr10:27388200-27390200	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr10:27388200-27390400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:27388200-27390400	Active TSS	Colon Smooth Muscle	Colon
20	chr10:27388400-27389600	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr10:27388400-27389600	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr10:27388400-27389600	Active TSS	Muscle Satellite Cultured Cells	--
23	chr10:27388400-27389600	Active TSS	Colonic Mucosa	Colon
24	chr10:27388400-27389600	Active TSS	Hela-S3	cervix
25	chr10:27388400-27389800	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr10:27388400-27389800	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr10:27388400-27389800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:27388400-27389800	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr10:27388400-27389800	Active TSS	Fetal Brain Female	brain
30	chr10:27388400-27389800	Active TSS	Placenta Amnion	Placenta Amnion
31	chr10:27388400-27389800	Active TSS	NH-A	brain
32	chr10:27388400-27390000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:27388400-27390000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:27388400-27390000	Active TSS	Brain Germinal Matrix	brain
35	chr10:27388400-27390000	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr10:27388400-27390000	Active TSS	Rectal Mucosa Donor 31	rectum
37	chr10:27388400-27390200	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr10:27388400-27390200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:27388400-27390200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr10:27388400-27390200	Active TSS	Ovary	ovary
41	chr10:27388400-27390400	Active TSS	Rectal Smooth Muscle	rectum
42	chr10:27388600-27389600	Active TSS	GM12878-XiMat	blood
43	chr10:27388600-27389600	Active TSS	HMEC	breast
44	chr10:27388600-27389600	Active TSS	NHLF	lung
45	chr10:27388600-27389800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:27388600-27389800	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr10:27388600-27389800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:27388600-27389800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:27388600-27389800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:27388600-27389800	Active TSS	Duodenum Mucosa	Duodenum

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